HsaINT1012314 @ hg38
Intron Retention
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31882699-31883009:-
Coord C1 exon
chr6:31882894-31883009
Coord A exon
chr6:31882786-31882893
Coord C2 exon
chr6:31882699-31882785
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
GCCATCTCTCCTACCCCCAGGGT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GATGGGCGATTGCTCCAGGAATTTAACAAGATTGAGCCTCCGCTGATTTTCGAGTGTAACCAGGCGTGCTCATGCTGGAGAAACTGCAAGAACCGGGTCGTACAGAGTGGCATCAA
Seq A exon
GTGAGGCCCTGCTCCACAGCCCACCCTCTCCCCACCTCACCCTTTCCTCCCTGCCCCTGGGGCTTTTCCAGGGCCTCCACCCAACAGCGCCATCTCTCCTACCCCCAG
Seq C2 exon
GGTGCGGCTACAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCGCGCCCTGCAGACCATCCCACAGGGGACCTTCATCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371:ENST00000375537:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PD(29.2=79.5)
A:
NA
C2:
PF0085623=SET=PU(15.9=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCGATTGCTCCAGGAAT
R:
TCGCAGATGAAGGTCCCCTG
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains