DreINT0009796 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1337249-1338399:-
Coord C1 exon
chr19:1338313-1338399
Coord A exon
chr19:1337328-1338312
Coord C2 exon
chr19:1337249-1337327
Length
985 bp
Sequences
Splice sites
5' ss Seq
CGAGTGTGT
5' ss Score
2.33
3' ss Seq
TGTGTGTGTGTGTGTGTCAGGTA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGTGCGTCTCCAGCTGTACCGCACAGAGAAGATGGGTTGGGGTGTTCGAGCTCTTCAAGATATTCCTCAAGGAAGCTTCATCTGCGA
Seq A exon
GTGTGTTCTCTCTCTATTCTCTGATCACATGCTGCCGTCTTTCGAAACATTAGATCTTCTTATTAGCAGCCGGTCTTGTTGATTTCTCATCTAGAAACTGTTCAGAGGATTTTGTCAGCCTGGTAACAGAAAGTTCAAAAGAATCATTTTAGGCTGATTCTCAAAACTGATTCTTTTGTAAAAGTTCAAAAGAATCATTTTAAACTGATTCTCAAAACTGATTCTTTTTTAAAAGTCAAAAGAATCATTTTAAACTGATTCTCAAAACAGATTCTTTTTTAAAAGTACAAAAGAATCATTTTAAACTGATTCTCAAAACGGATTGCTTTCAAAATTTCAAAAGAATCATTTCAAACTGTTTCTCAAGACTGATTCTTTTTTTTAATTCTAAAGAACCATTTGAAACTGATTCTTTTCAAAAAAATTTAAAGAATAATTTTAAACTGATTTTCAGAACTGATTCTTTTTAAAAGTTCTAAAGAATCAGTTTAAACGGATTCTCCAAACTGATTATTTTTTGTGAGTGAATCAGTCAAAATCATTGTTCATTAATTAGTAAGACGATTTTAGAAAAGGTTTAGAAACTAAAATCAAAAGTGATTTCCTCTGTTACTAATTAGAAAACTGCTTAGAGCTCAACAATCCAGCAGTCTTTAAAACCAGAATCAAACAAGCAGCGTTTATTTGACATAGACAATAGATTATTTTGCTACATTAATAAATATCTTTGCAGTATTAATTGTTCATACCAACTCATCGCAGGCTTTTATGGCAAGTTTTGAATGATGATGATGCAAATGAATCACTGTTTTTAACTGATTGATTCAAATGAATCATTTATTTGAATCATTTACTGGCTGGTTATTTTGATTCAAGCTGATTCTCAGGACACAACACAACAACCAAACGTAATTTGTTTTTAATTCTGTGTAAATAATTAATTAATTCTGTAATTCTCGTGTGTGTGTGTGTGTGTGTGTGTCAG
Seq C2 exon
GTATGTTGGTGAGCTGATATCTGATGCTGAAGCAGACGTGAGAGAGGACGATTCATATCTCTTTGACCTGGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]