RnoINT0053583 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4590629-4591638:+
Coord C1 exon
chr20:4590629-4590715
Coord A exon
chr20:4590716-4591559
Coord C2 exon
chr20:4591560-4591638
Length
844 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
AACCAGTTTCTGTCCAATAGGTA
3' ss Score
6.71
Exon sequences
Seq C1 exon
GGTGCGGCTGCAGCTCTACCGGACGGCCAAGATGGGCTGGGGGGTCCGTGCCTTGCAGACCATTCCCCAGGGCACGTTCATCTGCGA
Seq A exon
GTAAGTTCACGCTAAGGCCGTGGCTGACACCTGCTGACACCCAGGCCCCACTCTGACCTGCCTGCTGCTCCTCCTGCACTGAGGACAGAGATGGGGCCCGCTCTGCCTGAACCCCTGATCTCCCTGTCACCATGCACGTCTCCACCCACCCAGTGCGTGTATTCCAGACATCATGTCCCCCCTTTTTATTGCACACTGCCTAGATGTGGCCTGTGGCAGACGACCCGGGTTTGAGTTGTGCACTGTTGTGTGTGAGCTGTGCACTGTTGTATGTCCCCGGCCACTTTATTTAACCTCTTTCAGCCTTAATCGTCTTTGTCGAGCAGAGAATAGCTTCTTCCTGTGAATTTCCTCCCCGTGGCCATTAGACTCCCCTAGGTCTCCTGTGGCCTTCAGAGCAGAGAAACCCTCTCACCTGCTCCCTCCAAGGTTTCTTTCTCTGCTCCCTGAATTTTTCAGACACCCATGTCTGTCTTTGCGTTGTGCAGTTTCTCTGCCAGCCACACGGGGCATCCTCACGGCTGATGTAGCTGTGCCTGGGCCCACCACCTGTGTGATTCTGTGTTCTGACACCTCCCCATGTCTAAACCTGGAACTTTCCACCCAGCCTGCCACCAGGGATGCTAATCCCCAGAACACGGGCCTACGCCCTCCCCCAACATCTCCTGCCATGCCTTTGCAGGTCTTGCAGGCTCTTTCCTCCCAACCCCCACCTCCTGCCTACCTGCTGTTCCAGCTGCACAGGGGGACCCCCAGTGGCTGGACTGTGTCCTGCTCCCTCCCCCTGGGTGGGAGGTGGGACCCGGAGCCCCGCTCACACGCAGAACCAGTTTCTGTCCAATAG
Seq C2 exon
GTACGTCGGGGAGCTGATCTCCGACGCCGAGGCAGACGTGAGAGAGGATGATTCTTACCTCTTCGACTTAGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]