GgaINT0126659 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2480511-2484246:+
Coord C1 exon
chr17:2480511-2480597
Coord A exon
chr17:2480598-2484167
Coord C2 exon
chr17:2484168-2484246
Length
3570 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CCTTTCCTGTTTGCCTGCAGGTA
3' ss Score
12.87
Exon sequences
Seq C1 exon
GACTCGATTGCAGCTCTATCGGACGCAAAAGATGGGCTGGGGTGTGCGAACGATGCAAGACATTCCACTGGGAACCTTTGTGTGCGA
Seq A exon
GTAAGTTATTCCTTCAGCTTTCATTAGCTCACGCAAACGCATCACTTCCCAAGGGCTGGCATGCTTTGCACATGATTTCATGCAAATCAAATTGGCACAGAGCAGAGCTGCTCACCTCACTGCGAGGCTTCCTGATCCCATTTCCTGCTCTGTTTGTCCTTTCCTCGCAGCGTGGAGCTTTCTCCACCCCTCTCCATCTCGCTGCAATCTGTGGTCAGCTTGTGGTTCTGGGCTCTGCTACCCCTGTGACACACGAGGGATGAAAGAGTCTGGGTTGTGCTGCAAGTGCATTATGTGTTCACTGTGTAGGAGACCTTTAAGGCTGAGGGAATTTGGAACAACTGTTTTATATATGGTTGTTTTCTGCTTCAAGACTGACTTCCCAAGAGGTTTCCCAGTGTCACAGCTCTGCCTTTAGTCTGATTCATCAAAACAGTAAAGCATTTGGCATTAAGCACAAATTCAGGCCCTGGTTCAATAAAGTACTTAGGAACGAAGGTATTAAGATTTATATCAGGCTGAAAAAACTGCTGCCTGAACCACATGGTTTTAAGGCTTTAAAGTGGTTGATGTTCAGTAAACAGTTTGGAAAGTGTTTTCTTCATTGTGGTACTAATGAGCTAAGATGTTCTAAGTAAGACAGGGCTCTTCCCTTTCATGAAAATAGGTGCTGGGGTTTTATAGAGCTGGTTATTGATGTTGTATGGAGTCAGGCAGGAGACTGGTGTAGCATATTGCAGTATTTAAACAAGGAAAGGAAAAGAAAAATGCTTCATCCAGGCGAAGTCATGGGGGAGTGTCTCAAATGTGTCCTCAGGTGGGGCTTCCTGATGGGTTCTGATGCTTGCTGTGTCCTGGTTAAGTGCCCAGAGATGATCCTGAGCCTGTGAGCAAACTGCTCCTAAAGAAAACAGCACCAGCTTTACCACATCCTGCTGGAATGTAAACACGAGAGAGGGATAAGTGGTGATAAGCTGGCAGCCCAGGGAGACTGGGCAGCTCTGTGCAGCAGGTGATTAGCACAGATGGGTGTGTTGGAGAGTCAGAGCTGATGGGGTTCAGATGCCACAACCGCCCTTAACTCTTCCTCCATGCTTGCCAGGAGCTGCTGAGGCTGTTTCAGTGGCGGGCGCTATCTTCATTATCTAAATGAGCTGCATACTAAGAAGCTGAATTAATTTTTGTCTTGCCCATGCAGGTTCCTCCTTGTCCCCATCCCTCTCACTCACACTCATGTGATTTGCTCAGCTCACCAACCCCAGCCTTTCTCTTCCTCAAGCCAGCTGTGCTATTTCTCTAATACTGTACGTGCAGCCTTTATTTCTTCTTTTCCTCACCTCTGGCAAAGAAGCCCTGGTGTTGTGGGGCTCAGGGCTGCTTACACACAGCAGCTCCCAGGATCAGCACTTGGAGAAGAGTGTTTTGCATTGACCACCTGGAGCAGTGCCCTGACCAGGCAGTTGCTTTGTGCTGGGTTATTGCTCTGCTTTGAAAGGGTGATAATTGTGTTGCTCTAAGGACGGTACTGTGGCTATGAGCTTTGAATGAGTGAGAGGTAGAAAGCAGAGGTTTTGTGACACTCTGGTCTGTTCCTTTTGGTACGAGCCCATTATGTGGCTTCCAGATATTTAATTCCTGTACAAAACAGCTCTAGTAGGATACCATCTGAACCAGGGCAGGTATTTCAGCCACGCTTTCAGCCAGAGACATCCTGGGCATCCCACCCCATCCCCCGCACCGCATGGAAACAGCCACAGCCTGTGCTAGGGACATCTCGTTGCTCTTGGCTCTTGCACGGGATGTGCTCTGATCTCACATTGTGCTAAGCATCTTGCTGGGAAGCAGGACATTGCCTTCACTTCAGGCCTTCCATGAAGGATGCTCCGACTCTTCCTGGAGTAGGAAGGCATGCTCCTTGTGTATCTTTCTGCAACTTAGGACCTGGTAAATTATGGATAAGTTTGTATTGGTAAGCAGTAAAAGGAAAAGGAAAAGGAAAGGAGTTGCAGGAATGGTCTTTAAAGGAACGTGGAAACAACAATTTTTAGTTAGACTGTGGGATTTTTGTTCCACTGAATGGTAACCCTGAAGTGGCTGTCACTGAGCAGTGCCTCTCTGTGCAGCATTATTCAGCTGTTTCCAAGCTGCTGCTGGCTACTGTGCCACGCTACAGCAATTTCTCTCCCTCTGGCCACAATCTTCCTATTGCTTTAGGTCACCAGTGAGCATGTGGTTTCCAGTAATGCTGCAGCCTTGTGGGAGCTCTTAATAAATAACAAGATGCAGTGGGGGCGAACAGCAGCATCGCACACGGCCGCAGCAGCCTCCTGGCCTGGCGGAGCAACTCTGCCAGATTGCTTAGATTTGATAACTGCAGCCAAACGATCCCCGGTCACGGAGTGCGTGGGTCTGCTCCAGATTAATGTTTCGTGGCTCTCCTTCCTGAGCCCTGAAGTTAAATGCTGCCTCGAGCCAAAAGGGGATGTGGATACGGTTGGTTAATGCTTCTAAAACGCTTCTGAAAGCTGAAGGGGAATTGCTGGTGTGGTGGCTGCAGATCGTGGGAGCATCTGTTGGTGTTACCAAGACTATTTGTTTTGTGAGTCCTCTGCTTATAATTCAGTAATGCTGTGACAAAGGCTGTGGGGAGCTGGGTACGAGAATCCACTGTGTTACAGCTTCTTTCTTCTATTCCTCCCTCTGGCTCAATTCCTCTCCTCTTGTGTGTCTTTGTTTTGATTGCAGGCTGCTCAGTTCAGGAAGTGTTGTAGGTTGACAGCCTAGAACCGTGTAAGCTGGAGACAGGAGGCAGATGTGGGAATGCAGGTGCAGCAGAGACTCCTGCAACTTGAGTTTTTGCATCAATCCCAGCATCTATCTGGGGCGTCAGAAGTGGTGCCTGTGTTTGGTCCTGCTCAGCAAGCCAGACCACAGAGCACACGTTCAGTGGTACTTGGGAGGGCCTGATTGCAATCTGCCTTGCACCTGTTTTTACGGCAATGTGATTGTTACTCAGACCACAGCTCTGATATAGTCTGGTTTGAGGAGGATGAGGAAGAAGACTACATTCTTCCAGGCGTCCTGCCAGGTTTGGGTAGACCTGAGACTCTTAAAACAGGACATTTTCAGGTATACAGCACACGTAATCAGTTAAAATGTAGGAAGAATGGGAAACAAACGTTTTACATTGGAATGTAAACAGCACAGACATGACAGTACTGTACAGGAGGTGTGTCCAACAGTGAACATAAGGAGAGTTGGATTAATATATTGATCTTGGCCAACAAAGAGGATTGCAAAAGGAAGGAGTGAATTTTGTTGGAAATAAAGCTCCATCTTTCATATTAAAAATGTTGCCCTGAAAAGTCTGAGTTTGGAGCCAGATTTTAGCTGCTCTTAAGTTGGCAAAGCTGTGTTTGCCTGGGCGGATCTGAAATGACCCGCACTGCTGAGGCTATGAATTGTGATGGTGGCTGCATCCTTTCCTTCCCCCCTTACTGGAAAGGGGTGTTAAACCCAAGCTGGTGGTTGCACAAGCATCTTATTTCTGCCTTTCCTGTTTGCCTGCAG
Seq C2 exon
GTATGTTGGCGAGCTGATATCCGACTCCGAAGCAGATGTCCGTGAAGAGGATTCCTACCTCTTCGACCTTGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]