DreINT0061769 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28892156-28894484:-
Coord C1 exon
chr5:28894398-28894484
Coord A exon
chr5:28892239-28894397
Coord C2 exon
chr5:28892156-28892238
Length
2159 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGA
5' ss Score
3.08
3' ss Seq
GAGGATTTTGTTCTGTGCAGGTT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GCTCAGGCTGCAGGTGTTTAGGACTGAGAGGATGGGTTGGGGAGTTCGAACACTGCAGGATATTCCTGAGGGAGGTTTTGTATGCGA
Seq A exon
GTATGACACTTTTTTTTTTGTTTATTTAAATATCAGTTGCCTTTTTACATTAACAAATGCATGCATGAATATGATTTTTAAAAGTATGTCTGTGAAATGTTTTGCATTATAATGAATACTTTTAAAGGCACAGTATGCAGTTTTTGCCACTTGATGGCAAAACAAACAAAAGTGTAATTTGATGACACCGTGACTGAATGTGGAATCATTAGAGTTTCCTATGAGAGCTTTTATTATCTCACACTGGACCAATTACGATTCTTCTGCTCATGATAATGTGGGAAGGTTTTATCTTATTATGCATTTTAAGGCTAGGGATGCAACGATCAACTTATTTCACCTTTAACCATGCTTTAGTTCGTCATGATTAAGTCATCATGAAGACTTCTCAAAGGCTTTCTGCACAGAACAAAACTGCTGCAATTGAACAAAGTTATGACAACAGTGCACTAGTTTTAAGTTCTAAGCTCATTCACAGAGGCTAATATGCACACACACTGGATTAACTATGGCTAAGACTATTAGCCTAGGGCTCGCATCCGTGTCTTTTGTAAGCGCAAGTTTGTTAATCTTTTCTTGTGCGCAAATTGGGTAATAAAGTGTCCACGCAGCACCACACTCATCTAGTTGAAAGAATGGCTTGAGTCACTTGACAAGAACTAACTGATCAGCTTTATACTATGTATGTAATAAACACAATTCTACTCCAAAGAGAAAAAAAAAATAAAATAAAATTACCAAAATTTTTGTAATATAGTTGGTCAAAAGTGCCTTTCAGACAGAAGTCTAGCAGCCTTTGACTACATTTGTTCTCTTAAAAGAGAAATACTTATCTGATATAATAATAATAATTAATAATTATAAAAAAGACAATTTTTTTTATTTATTCGTATTATTATTTATTTATTAATTCATTGTTTTTTTTATTTATTTAAATTCTAGTGTTAAAATATTACTTGTGTTTAAATCCCAAAAACCAAAGTCCAGAGAGAAATGAACTTTGTTTTTATTATTATTATGTGCTGTATTTGTTTACTGAGCAGCAATAAATAACCCTTTAAAATATAAGTTTTCGTGTGATTTATTAAACCAGTAGTGTTTTAAAATTAATGAATGCATAATAATCATGATAACTATGAATATTCCTCAGACTATAATCGTACAACTTTTAATCAATACATAATAAAAACTATAATCGTTCAATGCATCTTGTATGATTTCTTAGATTGGTTATCACTAAATTAAAGTAGAAATTACATTTATACGTATTTACTTTAAAAGCCCTCTTAGGTAAACTACCATCCTATCTTTCTAATTTGCTAACATTTTACGTAAATAACCAACACTAGATTTGGTTCCTGTATTTGGTTAAATCCTAGGGCTTGGAATGACCTGCAAAACCTGCTTAATCTTGATACATTTCCCACTCTGAGTACTTTTAAACATCCTCTATACAACGTCTTAAAGGATACTTGTAATTGTTTTTTATGATCTGACCTTTTTCCGAATGGTGACTTTGTAATCTTGTGATATTTTTTTTTTGTGATATTTATGTGAAACTTCATGCGCTGCCTGCCGTCTTGACCAGGTCTTACTAGAAGAAGAGACAGTACTGTCTCAATGTGATCTCCTGGCAAAATAAAGGAAATAATAAAAAAACAAAATCTATCATCTGTAATCGTTGCATCCCTATTTAATGTTCTATTAATGCTGTTATAATGCTGGTTTATGCAGTCTAAAAAAATGCTCAATATATTATTGCAATTTTTGGTGTTTACCTATTTTCTAAAAGCACAAACCAAAAGTCATTAGCAACCAGAATTGACCATCATTCGAAAAATACTGGATTATGTAGGTACATAAGTTAGCCCATCATGAAAGCATTTCAGAATCACTGTTTTATGTGGATTGCATTAAAGATATCCTCTTATAAACTTGACATACAAGAATTTTAGTGTGAAAATTACACAAACCATCTCAATAAACCTTTGCCTGCATTCTGAAGAAGCCTCCTACTGACTCCAGTGTCATGGGTATTCATTTAATGTGAAATTTTCTGCAAAAATGAAAGCCATTAGGGGAATTATTAATTATTTAGACATGATTAATCTCATGCTGCTTTGGTCCAATACTTGCACTGAGGATTTTGTTCTGTGCAG
Seq C2 exon
GTTTGCTGGTGAAATAATTTCCGATGGAGAAGCTAACATTCGGGAAAACGACTCCTACATGTTCAACCTAGACAATAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]