RnoINT0053557 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1977074-1977673:-
Coord C1 exon
chr3:1977587-1977673
Coord A exon
chr3:1977153-1977586
Coord C2 exon
chr3:1977074-1977152
Length
434 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CTTCCCTTTTCTCACTACAGATA
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTTCAGGATATCCCGCTGGGCACCTTTGTCTGCGA
Seq A exon
GTAAGTAGGTCCCCAGGGTCCCACAGCTCTGTTGATTGTGTTTTTGTTTATTAGATAGTTTGTTTTGTTTTTTGTTTCTGGGACTTCTCATGCATGTTCATGCATGTTCATGCATGTTCATGCTGCAAGACCCCCCCCGGGAGTGCAGAAGTGGGTGCGGCAGTGGAGGTGTTGATTATACCGACCAGGCTCTCATGTCCTGTTTAGATTTTCCTACCTCAGTCATTCACTAAAGGTGTTAGCTTTAGAACTCTAGTACTAGTATCTTGGCAAGCCATCCTTGGTCCTCACCTTGCACTGCAGACACACAGGGCCAGATCCAGATCCCAGCCCCTACAGCTTTCCAGAGTGTCCTGTGTCTGCATCCTTTTGTGGCATTGTTCCTTGTCTGAGGGCACAGAGGAGAGATGGCTTCTTCCCTTTTCTCACTACAG
Seq C2 exon
ATACGTGGGGGAGCTGATTTCAGACTCCGAGGCTGATGTTCGGGAAGAGGACTCTTACCTCTTTGATCTTGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]