BtaINT0024988 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27288716-27290336:+
Coord C1 exon
chr23:27288716-27288802
Coord A exon
chr23:27288803-27290257
Coord C2 exon
chr23:27290258-27290336
Length
1455 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
CACCACTTCCTGCCCAACAGGTA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGTGCGACTGCAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCGTGCCCTGCAGACCATTCCCCAGGGTACCTTCATTTGCGA
Seq A exon
GTGAGTGGTTGAGGGGGAGGGGTACTCTGGCTCTTCGGGGCAAAGGGCTGGGTGCAGGGCCACGGCTGACTCCCAGGCATCCCTCTCTGCCCTCCTCCCTAATGGGTCCACCTGGCCAGCCTCCTCTGACCACCATCCCCAAGCCTCCACTCTGCCCAGGTCACAGGGCCTGTGTCTTTCCCTCCCCATTGGTGTCTTCCTGAGCTTCACACTCCCTCTCCCCTGCCCTTCTCAACTGGGGAAAGGCCCAGTTTTAACAGACCAGGGTTTGAGCCCCATTCTGCCACTGGGTGTCTTCGGCCAAGTTCACAACCACTTTGAGCCTCCTCCTCCTTGTCTGCAAAATGGAGGTGATAACAGCTACCCTTCCGTCCACCTCCTCAGGGGCCTCAGGCCTGCCCATCTGTCAGTTCTTTCTCTTCCCAGCATCTATAACTTCTCCGTGTCTCCTAGCTTTTACCCCATGGTCTTCAAACTTAATCTTCTTTGGCTTTCAAAAAAAAAGTCATTCAGCCCTATTTGGCTATTTAAGAAACCATTCATTTTCCCTCCATCGTGTCATCTCTCAGTTTGACTCAGACAAGCGGCCTCTTCCTGCTGGATCTCAGTTCCCCCCATCCACTCCCTACTCATCCCTGCCCAGATCTGCCTTTACCCTCTCCCTCTGCTTCCTCTCGTCGGTCCCCACGCCCCGACCCCTGTGTCTCAGTCTGCATTCTCCTGGCATCCGCCACCCCCTTAGCTCTGGCTCCCATGACACCATCCTTAGCCGCAACTCATCCTTTCTTCCTCTTCACCAGCTCCTCTTCCTCTGCTTTCCAAACGTGGGTGCTTCCTCCCCAGTTCTTCACAGCTCCTGGGGCTCCATCCCTTCCTGCAGTTCTCACCTCTCTCCTGTCCTCAGCCTGACCTTGCCCCACCTGCTGGGTGATTTCCTCGTCCTCCCCATGTCTACACCTGAACAGATTCCCCACCCAGGCCCACTGCCAAGATACTCATCCCTTCACCCCAGAGGCTTGGCACTTCCGTACTCACCTGAATCATCCTCTGGTGCAGCTTGTACCTTCCCTTGAGCTTCCCCACCGCTGCTACTCCAGTGGCCCCACACTTCTCACCCCTGCCCCACACTGTCAGGTCCTGCCTGTTGATCTCGCTGTCCTGGGGGAGCCCGACTGGCCAGTTTGTCCTGTGTACTCTCACATGCCTGTGTCCCCAGGCTCCTCTTCCTGATCCCCCTTCTGGATGGGGACCTCCTACCCTCTCCCTCCTAGATCATGTCTGCTATCCTTGGGTCACCCACCCCAGCCATGTGGATCTGTGAGATTCACGGAGAGTGTCTGGGGCAGCTGACAAATGGTGGAAGAGGAATCCCAGGCTGTGGGGAGAGACAGGCCCTGGAGCCTACTTGCAGTAACTCCCTGCTCACCTCCAGAACCACCACTTCCTGCCCAACAG
Seq C2 exon
GTATGTCGGAGAACTGATCTCTGATGCCGAGGCTGATGTGAGAGAGGACGATTCTTATCTCTTCGACTTGGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PU(15.9=56.7)
A:
NA
C2:
PF0085623=SET=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]