DreINT0010657 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4074199-4074638:-
Coord C1 exon
chr22:4074519-4074638
Coord A exon
chr22:4074431-4074518
Coord C2 exon
chr22:4074199-4074430
Length
88 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CATCTTCCTTCCCTACCTAGATG
3' ss Score
10.45
Exon sequences
Seq C1 exon
ACGTCGATGAATGCGGTGGAAACCACCGGTGCCAACATGGCTGCCAAAACATGATGGGAGGATATCGCTGCGGCTGCCCACAGGGTTACGTTCAACACTACCAATGGAACCAGTGTGTGG
Seq A exon
GTAAGTGCAGTACTTGTGTTTGGAAGACTCGACAAGAAAGCTCAGCTGCTGAATGGTTCTCATTTCTGCATCTTCCTTCCCTACCTAG
Seq C2 exon
ATGAGAACGAATGCACTGGAAACCAAGTCTGTGGGTCGGCGTCTTGCTATAACACTCTGGGCAGCTATAAATGCGTGTGCCCGTCAGGTTTCGACTTTGAGGCCACTGCTGGGGGCTGTCAGGACGTTAATGAATGCTCCATGGGTAATAACCCCTGCAGCTATGGATGCTCCAACACAGATGGCGGATACTTGTGTGGATGTCCAGGAGGCTTCTACCGAGCTGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(90.0=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGAATGCGGTGGAAACC
R:
GTTATAGCAAGACGCCGACCC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]