GgaINT0062454 @ galGal4
Intron Retention
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56593224-56595293:-
Coord C1 exon
chrZ:56595174-56595293
Coord A exon
chrZ:56593456-56595173
Coord C2 exon
chrZ:56593224-56593455
Length
1718 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGTTTTTGTTTGCTTTCTAGATG
3' ss Score
10.6
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
Seq A exon
GTAAGGAAACAAACTGCATGGAATACATTTGAATAGCAAAACTGTCATTGTGATTACTGTGATAAACACCGGGTGAGGAGAAGAATGGGCGCTGCATGTGTCTGCAAAGGATGTGCAAGCACATAGTTTTTTAATCCCTCTCCCCTTCCTTTCTTCTACTTCATACTCCCAGTGTAGATCAATGACAGAAAACAGAGAAAACATACATATTGATGGCACATTTATCATATTCATATTGTTAGAACTCTTTGTGACAAGGTGTCTCTCCGAGTCAGACTCCCTTCTCCTCAGGAAAATCCTCATCTTAGAAAGGTGGAAAGGTGTTCCTTGAATTCCTTCAATTTAGGCTTAAAGCAATTAGCTCTGTTAGAGAAAAAAAAAAATAAAAACAGCTTTTCATGAATAAGAATCACTCGTTAGCTTTTTGGGAATAATGCAGAGCAGTGACTATAGTGAAAAGAGAGAAAAAATAACAACATAATAATTAAGGGATTTCTTCATCCAAAATACTGTGTGAAAGCTTGCATTAGTTCATTGGGCAGGCAATAAGGACAAATTAATCAGCTTAGCAGTTTTATTCTACATCTGGCTCATTCAGTCCATGATTTCTTCTCTGTGTTTCCTGAGCTAAGCCAATTCTCACATCATATGGAATGTAAGAAATAAAAAAATATAAATAAAAACCAGCACAGCCAAACTAACCCATCCTATATGATGCAGTAATCAGAGGATGGCTGTGAGCAGTGATGTAGAGTAATGGGTTAATCTTACTGCCCTATTACACATCAAAATCAGTTTTTTTATGTGTGCTTTGCACTAAATAATACACCACATAGTTTTTCTTAAGATCCAGCCACCACCATCACTCCTTAATACTACTCTTCAACAAAAAAAGCAGGACGCACAGGTAACAATTCCCACAAATTTCCAGTACAGCTGTAGTCCTTGAATGTAGAATAAAGATGGATAGCCCTCAAAAGAACATGACTTACAGCAACTGCAGGCAAAATGGTAAAAAAAATGCATCAGTGATGCTGGAGAAGACACCTACAGGGAATCAGTACCTTGCTAAGATAAATAAAATAAGCAGAATACCTACCAGTTATCAAATGCACAATCTTTCATGCAACAAGTTACTTTCCTCACTCATTTTTCACAAGATAATCTGCAGCCAAATCAGTCAGACTGAGTAGAGGAGCCATCTCTGTATATTACTGCCCATACGATGATAACAGTTCTTGGTTTCTCTTTCATTTGAGGTGGCTATTCAGATTGTCTTTCCCCTCACAGAACCTGCAGATTTCTACTAGAAATATGTGTTACCTCCACCTTATCTCTAGCTAACCGTGAACACTGTTATGGTCCAAGTATGACTGGAGTTTCAACTCATTTCTCTTCTGTGAATCTCATGTGGTAGGAATATACAGTGCCAGGATAAAGAATATTGGCACAGACTCCTTAGCAGAACTGGAGACGTGCTTTGAAGGAAAGTGGAGCTTTGGGAAGAAGCTTAGAAGTAACAGTATCCCAAAACACCTTTACCAGCTGTTTATGTTTGGGACTTTGGCCAGTGTATTTCTTAATTTGTGAACCACGTCTTTGTCAAGGATGTAGCAGAGCCCAGGGACTTGCATATGTTCTGATTTGTTAGCTATGTTGTGTCTGTCTGGTGTCTGTCCAGATTAGAAGGTACCAGTATGTTTTTGTTTGCTTTCTAG
Seq C2 exon
ATGAAAATGAGTGTTCCAATCCTAACACATGTGGCTCTGCTTCCTGCTACAACACACTCGGAAGTTACAAGTGTGCCTGCCCTTCTGGATTTTCTTATGACCAGTTCTCCAGTGCATGCCATGATGTGAATGAATGTTCTTCTGCCAAGAACCCCTGCAATTATGGTTGTTCCAACACTGAAGGTGGTTATCTTTGTGGCTGTCCACCAGGATATTACAGAGTTGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAATGTGATGGAAATCA
R:
CTCTGTAATATCCTGGTGGACAGC
Band lengths:
342-2060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]