GgaINT0062454 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55652636-55654711:-
Coord C1 exon
chrZ:55654586-55654711
Coord A exon
chrZ:55652868-55654585
Coord C2 exon
chrZ:55652636-55652867
Length
1718 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TGTTTTTGTTTGCTTTCTAGATG
3' ss Score
10.6
Exon sequences
Seq C1 exon
GCAAAGATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
Seq A exon
GTAAGGAAACAAACTGCATGGAATACATTTGAATAGCAAAACTGTCATTGTGATTACTGTGATAAACACCGGGTGAGGAGAAGAATGGGCGCTGCATGTGTCTGCAAAGGATGTGCAAGCACATAGTTTTTTAATCCCTCTCCCCTTCCTTTCTTCTACTTCATACTCCCAGTGTAGATCAATGACAGAAAACAGAGAAAACATACATATTGATGGCACATTTATCATATTCATATTGTTAGAACTCTTTGTGACAAGGTGTCTCTCCGAGTCAGACTCCCTTCTCCTCAGGAAAATCCTCATCTTAGAAAGGTGGAAAGGTGTTCCTTGAATTCCTTCAATTTAGGCTTAAAGCAATTAGCTCTGTTAGAGAAAAAAAAAAATAAAAACAGCTTTTCATGAATAAGAATCACTCGTTAGCTTTTTGGGAATAATGCAGAGCAGTGACTATAGTGAAAAGAGAGAAAAAATAACAACATAATAATTAAGGGATTTCTTCATCCAAAATACTGTGTGAAAGCTTGCATTAGTTCATTGGGCAGGCAATAAGGACAAATTAATCAGCTTAGCAGTTTTATTCTACATCTGGCTCATTCAGTCCATGATTTCTTCTCTGTGTTTCCTGAGCTAAGCCAATTCTCACATCATATGGAATGTAAGAAATAAAAAAATATAAATAAAAACCAGCACAGCCAAACTAACCCATCCTATATGATGCAGTAATCAGAGGATGGCTGTGAGCAGTGATGTAGAGTAATGGGTTAATCTTACTGCCCTATTACACATCAAAATCAGTTTTTTTATGTGTGCTTTGCACTAAATAATACACCACATAGTTTTTCTTAAGATCCAGCCACCACCATCACTCCTTAATACTACTCTTCAACAAAAAAAGCAGGACGCACAGGTAACAATTCCCACAAATTTCCAGTACAGCTGTAGTCCTTGAATGTAGAATAAAGATGGATAGCCCTCAAAAGAACATGACTTACAGCAACTGCAGGCAAAATGGTAAAAAAAATGCATCAGTGATGCTGGAGAAGACACCTACAGGGAATCAGTACCTTGCTAAGATAAATAAAATAAGCAGAATACCTACCAGTTATCAAATGCACAATCTTTCATGCAACAAGTTACTTTCCTCACTCATTTTTCACAAGATAATCTGCAGCCAAATCAGTCAGACTGAGTAGAGGAGCCATCTCTGTATATTACTGCCCATACGATGATAACAGTTCTTGGTTTCTCTTTCATTTGAGGTGGCTATTCAGATTGTCTTTCCCCTCACAGAACCTGCAGATTTCTACTAGAAATATGTGTTACCTCCACCTTATCTCTAGCTAACCGTGAACACTGTTATGGTCCAAGTATGACTGGAGTTTCAACTCATTTCTCTTCTGTGAATCTCATGTGGTAGGAATATACAGTGCCAGGATAAAGAATATTGGCACAGACTCCTTAGCAGAACTGGAGACGTGCTTTGAAGGAAAGTGGAGCTTTGGGAAGAAGCTTAGAAGTAACAGTATCCCAAAACACCTTTACCAGCTGTTTATGTTTGGGACTTTGGCCAGTGTATTTCTTAATTTGTGAACCACGTCTTTGTCAAGGATGTAGCAGAGCCCAGGGACTTGCATATGTTCTGATTTGTTAGCTATGTTGTGTCTGTCTGGTGTCTGTCCAGATTAGAAGGTACCAGTATGTTTTTGTTTGCTTTCTAG
Seq C2 exon
ATGAAAATGAGTGTTCCAATCCTAACACATGTGGCTCTGCTTCCTGCTACAACACACTCGGAAGTTACAAGTGTGCCTGCCCTTCTGGATTTTCTTATGACCAGTTCTCCAGTGCATGCCATGATGTGAATGAATGTTCTTCTGCCAAGAACCCCTGCAATTATGGTTGTTCCAACACTGAAGGTGGTTATCTTTGTGGCTGTCCACCAGGATATTACAGAGTTGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=7.3),PF0000822=EGF=WD(100=73.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATGTGGATGAATGTGATGG
R:
TGTAATATCCTGGTGGACAGCCA
Band lengths:
345-2063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]