DreINT0010757 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36552240-36553084:-
Coord C1 exon
chr15:36552905-36553084
Coord A exon
chr15:36552811-36552904
Coord C2 exon
chr15:36552240-36552810
Length
94 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GAATTGGCTTTCTTTTCCAGGTC
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGCAGCTGCGTATATCAGTTAGTTGGAGTCTGTGTCTCAGCTCCTGGCCTGGTGCCCTTCAATGTGCTGGTGCAAAATGAGTTCCGTGGAAGCAGAGCGGTGACATTCACCAAACTACTGGAGATTAAAGTATATAACATCAGCATTGTTATCGATAAAGAATATGCCGGATTTGTTACC
Seq A exon
GTAAGTATTATTTACACACCTAAACCACTGCCAAACTATTTTATCATTTCAAATAGCTCGGTGAAATTGAAGCAGAATTGGCTTTCTTTTCCAG
Seq C2 exon
GTCAACGGTGTACTGTTGAATCTCCCATTTAATCTTCTTCAAGGTCAGGTTTCTGTCTTCAGAAGTGGCTTTTATGCTGTTGTTCAAACCTCTTTCGGCCTCAAAGTCACGTTTGACTGGAACAGCTTTGCAACCGTCACCGTCCCAAGCACCTACATGGGTGCCGTTTGTGGCCTCTGCGGGAACTATAATGGAAACCCAGAGGATGATCTGGCTGTCAAAGGAACAACTTCACTCTCTTATGGAGCCATGGAGTTTGGTGCCAGTTGGCTTGTAGCTCAGATCCCAGGCTGTGCTCATGGCTGCACAGACAACTGTCAGACTTGCGATCCGTCCAAAATGAGTCTCTATGGGACGTCTGATTACTGTGGGCTGCTGCGGGACCCACAGGGGCCTTTCGGGGACTGTCATACCATCCTAAACCCTGGTGCATTTTTTGAGGACTGTGTTTATGATGTCTGCCTGTATGGAGGAAGGCGAGATATCCTATGCCAAGCCATAACGACGTATGCATCTTCCTGTCAGGCCATGGGAAAGACCATCAGTCCCTGGAGAAGTGCTGAATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.8=100)
A:
NA
C2:
PF0009420=VWD=PD(48.1=39.3),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTGTCTCAGCTCCTGG
R:
TGGGAGATTCAACAGTACACCG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]