GgaINT1001144 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12692380-12694304:-
Coord C1 exon
chr9:12694060-12694304
Coord A exon
chr9:12692664-12694059
Coord C2 exon
chr9:12692380-12692663
Length
1396 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTCCTTCTCTGTTCCTGTAGGTT
3' ss Score
11.84
Exon sequences
Seq C1 exon
AAGCAACTTGCACTATACATGGAGATCCTCATTATTTAACTTTTGATAAGCAGCGTCATGACTTCATGGGCACTTGCACCTACACGCTCTCCAAGCTGTGTGAGAACAACAGCTCACTGCCCTACTTCAACGTGGAAGCTGCTAACGAGCACAGAAGAGGCAACAAACGTGTGTCCTATGTCCAATCTGTGGACATTGATGTTTATGGCTACAGGATCAATCTGGGTAAAAACAGAGTTGTTAAG
Seq A exon
GTAAGGCTGGATCTCACTATCTACTGTCAGTAAATCATGCTTTGAAGAAATTGTAGTACAATGGCTACAAATCTCTTGGCAAGCATAAAGCAATATTTAGAAGGCAGTCAAATATTTGGGAACAGTAGTACTATGGGTTCCTTAAAGTAAGCATTGAGATTTCAGAACAGAAAGAAAATACAAAACGTTGTATTTCTGTGTTCCTAACAGTTAAGAGTAGAGCTGATACTCTGGGTGGAGTTGGTGAGCGAGCCCTCCATTCAGAGATTGACCTCCATTCCTAAACTTGGTCTGCAGCAGGGAATAAAAAAGGCCTTTCATTAACAGAGCTTGTGCTGGTAGATATTTCCCAGGCTGTAAAGCTGCATGCTCATCTCTGACTTCTAGTTGTTCCTCATCACTGCTAATTTCACTTAATACCTGGCACTTGCCATAAAGCACAGCCAGATGAGAGTCCCAGAAAGGCTGCCTGATGACTCACATCACTCTGATTGTGTCACTGGACCAGCTGCTGTATTTTAAGGCTTCCTTATAACTTATTTCCATGAAGAGCCAAGGTAGCAGATACACATTTGATTGAAAACCCACAGTAATTGAATAGATCACCTTACTTCATTATCACTCTTCTTATAAAGAAAATAGGACAGGAGATAAGGATTTAAATATACAGAGACTTCACAACTTAGATGCATAGTGAACTTGATATCTGCATTTGTCCAAAAGTTTCTCTTTTCAATCTCTTCACTGTATTTACTGTTTTCATTATATATGTTTCTAAGTTGAAATGTATATATATTAATTATGTAATAAGAACAAATATTCAAAGAATGTTAGTTTTATTGAATTTAAAATAAATTGCAAATTTTATTTGAACACTTCCTTCTTACTGTTGGCATTTCACATGTGAAAATTAACAAGAAAGAAAAAGAAGAGGGAAAAAAAAAAGAAAAAAAAAGGAACAAAAAATGTTTTCAAAATATGTCCAACCCTGAAAATTTTCTGAGACTCCATTCTAGCTACATCTTTTAAATCTTATACCATGCTCTTGTTTGATCCCGAAAGCCTGTAAGCAGTTACTGCTGAAAGACCTTGATAATTTTTGCACTTATTCCAGCTGGGTCTAGTTCACCAAGCTTACTTTGACCACAGCTAAGACCTGGAAGATAAGTACATGCATTACTACGGTCTTGAGGCCCAAGGTCATTTGTCCACATATAGCATTCATGTTATGTAAGGCCCAAAAAGACCCAGAAACACAACACTGTGTGTTCTTAATGCTAGTACAGGTTCACTGTACAAACCCTATGCTCTGTATAGGAACATGGTCTAAGAAAATCACTATTAAAAATACGTATTTTAAAGTGATTATACTGATTGTCCTTCTCTGTTCCTGTAG
Seq C2 exon
GTTGATGGAGTCAGCCAGGTACTCCCTCTGACCTTGGGCAATAGTGTCAGCATTTCCCTCAGTGGTCAATATGTTGTGGTTACTACTGACTTTGGGCTGAAGGTCAAGTTTGATGGAGATCACAGAGCAGAAATCACTCTTCCCAGTGCCTATATATCAAAAGTCTGTGGGATATGTGGAAATTATAATGGGGACAAAAAAGATGACTTTCTTAACCCAGATGGAGGGATGGAAACAGACTCAGCCAGCCTTGGAAACAGTTGGCAAGTTTACAATGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACAGAAGAGGCAACAA
R:
CAAGGCTGGCTGAGTCTGTTT
Band lengths:
353-1749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]