BtaINT0061727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49741093-49743097:-
Coord C1 exon
chr18:49742760-49743097
Coord A exon
chr18:49741667-49742759
Coord C2 exon
chr18:49741093-49741666
Length
1093 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
CCGCCCTCCTCTCCCCCCAGGTG
3' ss Score
13.54
Exon sequences
Seq C1 exon
ACCCGTGCCACAGTGTGACATGTCGGCCACAGGAGACGTGCCAGAATAAGAATGGCCAGGGCGTGTGCGTGCCCAACTACCAGGCCACGTGCTGGCTGTGGGGCGACCCACACTACCACTCCTTCGACGGCTGGAACTTTGACTTCCAGGGCACCTGTAACTATGTGCTGGCATCAACCGACTGCCCAGGGAGCAATGCCCAGGGCCTGACACCCTTCACTGTCACCACCAAGAACGAGAACCGGGGCAACCCCTCAGTGTCCTATGTGAGGCTGGTCACCGTGACCACCCTCAACACAAACATCTCCATCCACAAAGGCGAGATCGGCAAAGTCCGG
Seq A exon
GTAAGGCTGGTCCCAAGTCCCCAGGTAGGGTGGGAAGGGTCCTGCTGGTCACAGATGGGGAGCTCAGGGCTCTCTCTCTTCACTTAGTCCTGAAACAAAATAGCAAGAGCAATGATAATCACCCCACTATTGGGAATTAAATGAGTCTAGCCCTTCATTAAGGGCTTTAATGTAGGACTTTAGAATTTGCCTTTTTAGACATCTGGGTTTGAATCCACCCTCTCTTTATGAGATGTGTGATATTGGGCAAATGACTGGACTTGGTGGGCCTCAGTTTCCTCATCTGTGAAATGGGCATCATAGCAGGCACTGCCCCACAGTGAGTGATGCACGTAGAGTGCTCAGCTGAGGGTCTGACCCAGGTAAGCACCCTTGATTGTTTGCGAGGAAACAAATGAGAGGCCCCGAGCCTCAGACATGGAGAGAAATTCAAGGAGATCCGGAGAGAGCAAGATGGGCTGCCCTTTCTGCCCAGAATAACGGAGATGCAGATTAGTGGCAGCTCACAGGGAGAGAATGATTTATGGAACAGAGTAGGCACTCGATAAACGATGGTGAGTGAGTGGCAGAGATGGCCAGACACACAGAGATGCACAGGAAATAAGGAGAGAGGGAGGGACTAGGTGAGTAAGACCCAGAGAAAGACCAGAGAGATGGACCCAGAGAGAGACAGTAACACACACACACACACACACAGATGCAGAGAGAGATAATGCACAAGTGAGAGAGACACGGAGAAGGGAAGAGGACCCAGAGAAAGAATAAAGAGAGACAGAGTGCGAGAAACTCAGAGAGAGAGACCAGAGAGAGCAGTAGGTCCAGATGTAGAAAGAGAGACAGAGAGGGAAGAAGGGAGGGAGATGGAGATCAAAAGAGAAACCCAGAGAAAGCCACGGGGTGGGCTTTCATTCTCCAGGGCCTGGACTAGAGCAAACCTCCATAGTGTTTGTCAAATGACTCTATGAGCAGCAATCATGAGGAAGGCCTTGGCAGCTCCCAGCCACGGCGGGACGAGCGAGGGAGGCAGGGGGCCAGATCTGGGCCTCCGCATCTCCAGTGACCTGGTTTGCCTCCCGCCCTCCTCTCCCCCCAG
Seq C2 exon
GTGAACGGTGTGCTGAGGGCACTGCCTGTCTCTGTGGCTGACGGGCGGCTTTTGGTGACCCACGGTGCATCCAAAGCAGTGCTGGCCACTGACTTCGGGCTGCAGGTCACTTATGACTGGGACTGGCGAGTGGAAGTGACGCTGCCCAGCAGCTACCACAGCGCCATATGTGGGCTCTGCGGGAACATGGACCGCAACCCGAGCAACGACCAAGCCTTCCCCAATGGCACCCTGGCTCCCTCCATACCTATCTGGGGCGGCAGCTGGCGGGTTCCAGGCTGGGACCCACTGTGCTGGGATGAATGTCAGGGGTCCTGCCCGACCTGCGCTGAGGACCGACTGGAGGAGTACGGGGGCCCCGGCTTCTGCGGACCCCTGGCCCCTGGCTCCGGAGGCCCCTTCGCCGCCTGCCATGACCATGTGGCCCCCGATAGCTTCTTCAAGGGCTGCGTTCTGGATGTCTGCCTGGGCGGTGGGGCCAAGGACATACTTTGCCAGGCTCTGGCTGCCTACGCTGCCGCCTGCCAGGCCGCTGGGATCGTCATTAAGGACTGGAGGACGGAGGCCGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.2=72.6)
A:
NA
C2:
PF0009420=VWD=PD(47.5=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCCACAAAGGCGAGA
R:
CCCTGACATTCATCCCAGCAC
Band lengths:
346-1439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development