MmuINT0063648 @ mm9
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28886217-28888246:+
Coord C1 exon
chr7:28886217-28886554
Coord A exon
chr7:28886555-28887672
Coord C2 exon
chr7:28887673-28888246
Length
1118 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
TGGACTCCCTCTCTCCCCAGGTG
3' ss Score
13.07
Exon sequences
Seq C1 exon
ACCCATGCCATGGTATCACCTGCCGACCACAGGAGACCTGCAAAGTTCAAGGTGGTGAGGGTGTGTGTGTGCCCAACTATAATTCCACGTGTTGGCTGTGGGGTGACCCTCACTACAACTCCTTCGATGGCTGGAGCTTTGACTTCCAGGGCACCTGCAACTACCTGCTGGCAGGAACGCTCTGTCCTGGGGTCAATGCCGAGGGCCTGACTCCCTTCACTGTCACAACCAAGAATGAGAACCGGGGTAGCCCCGCTGTGTCCTACGTGAGACAGGTCACTGTGACCACTCTCAACACCAACATTTCCATCCACAAGAATGAGATCGGCAAAGTCCGG
Seq A exon
GTATGTTAGCATGATGGTCCTGGAACACCCTGGGGCATGGGGCCAAATGAACCCTGGTGTTAAAAGCAGCAGTGAGGAGCTGGAAACTCACCATTTCCACAGAGGCATGAAACTACATAGAGAAAACTGCAGGAAATGGGGCACCCTTTACCTGGTAGTCAAGCGCAGCCCTCTGCTAAGAGCTTAAAGTAGACCCATGACGTCCTCCTTCACATAGACCAGTGTTTCTCAGCCTTCATAATGATGTGACCTTTCAATGCAGTTCTTCATGTTACAGTTACCCAAAGCCATGCAATTATTTTTGTTTGTGAGTGATAGCCGTAAGTTTGCTGTTATGAATCATAATGTGTTTACTGATGGTCTAAAGTGACCCCTGTGAAAGTCATTTGACCCCCAAACCTATAAGTTGAGAACTGCCAGAATAGACATAGATCTGAGCTCAGGTCCCCTCCTGATGAGGTCTGTGACACCATGCAAGGGACTGAACTCGGCAGGCCTTGATTCTGCCCGAAAACCCAGCACTGTGGTACCAGTTAGAGCTCAGCTCAGAGCCCCACTCCTTAAGCAAGCATCTGTCAGTGGTCGGGAACGAACGAGAGGCCCAGGCTCAGAGAACATCAGAGGAACTGGGGTGGGGGTGGGGGGCGGCAAGCATAAACCAAACATTCTGTAGATGGAATGAGGGTGTAGGGAAACAGTGACTTAGAGAGAGGCTGGAGCCAGGACAGAGTCAAAGCCTTCTGGTCAAGGGAGACATATAGAACAGAGATGCAGAAAGAGAGGGACAGGAAGGGAAACAAAAATGTGGGTAGGAGATGCAAAGAGACAGAGACCAGAAAGGGACTTCTAAAGAGAAAGACCTAAAGGAAGAGGGTGGCTAGGAGGAATGAGGGGTTGGAGGAGAAGGAAGAGAGTGAATTTAGAGGAAAACCCAAAAAGGCGTGGAAGAGGAGGGTTCGTTTCTCAGGGGCTGGATTAGATGGCCATGGGGTGTGTAAGGTACTGACCCCTACAGTCAGGAGGAAGCGCTTTAGGAGGAGGGAGGTAACCTGGACAACAGAGGATACAGCTCCACCTGCACTGCTCCCTGACCCCTGTTGGACTCCCTCTCTCCCCAG
Seq C2 exon
GTGAATGGAGTTCTCATGGCCTTGCCTGTGTACTTGGCTGGTGGGCGGATTTCAGTGATTAATGGAGGCTCAAAGGCTGTGCTGGAGACTGACTTTGGGCTTCAGGTCACCTACGACTGGAACTGGAGAGTAGATGTCACGCTGCCCAGCAGCTACCATGGTGCAGTGTGTGGGCTCTGTGGAAACATGGACAAAAACCATCAAAATGACCAAGTCTTCCCTAATGGCACAATGGCACCCTCAATACCTACCTGGGGTGGCAGCTGGCAAGTTCCAGGGTGGGACCCTCTTTGTTGGCATGAATGTCAAGGGTCCTGTCCCACATGCCCAGAGGACCGAGTGGAGGAGTATGAGGGTCCTGGCTTCTGTGGACCTCTGGCTCCTGGTACAGGGAGTCCTTTCACCAGCTGCCATGCCCATGTGCCTCCTGAAAGCTTCTTCAAGGGCTGTGTGCTGGACGTCTGCCTGGGTGGGGGCAGCAAAGACATACTGTGCCAGGCACTGGCTGCCTATGCTGCTGCCTGTCAAGCTGCTGGCATCAAAATCGAGGACTGGAGGACTCAGGCCGGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-Fcgbp:NM_001122603:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.2=72.6)
A:
NA
C2:
PF0009420=VWD=PD(47.5=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGGTGGTGAGGGTGTG
R:
AATCACTGAAATCCGCCCACC
Band lengths:
354-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: