HsaINT0063136 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40400250-40402471:-
Coord C1 exon
chr19:40402134-40402471
Coord A exon
chr19:40400824-40402133
Coord C2 exon
chr19:40400250-40400823
Length
1310 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
GCCTTCCCTCCTTCCCCCAGGTG
3' ss Score
13.51
Exon sequences
Seq C1 exon
ACCCGTGCCACGGCGTGACATGCCGGCCACAGGAGACATGCAAGGAGCAGGGTGGCCAGGGCGTGTGCCTGCCCAACTATGAGGCCACGTGCTGGCTGTGGGGCGACCCACACTACCACTCCTTCGATGGCCGGAAGTTTGACTTCCAGGGCACCTGTAACTATGTGCTGGCAACAACTGGCTGCCCGGGGGTCAGCACCCAGGGCCTGACACCCTTCACCGTCACCACCAAGAACCAGAACCGGGGCAACCCTGCTGTGTCCTACGTGAGAGTCGTCACCGTGGCTGCCCTCGGCACCAACATCTCCATCCACAAGGACGAGATCGGCAAAGTCCGG
Seq A exon
GTATGTGTGGCAGGATGGTCCCCTGAGGTCCCCGGGAGGGCAGGAGGGATCCTGACGACCACAGTTAGCAGCTCAAGGCTCTTTGTCTTCACCTGGGCCTGAAACAAACTGTCAACAAAGAGAATAATTGCAACAAAAATGTCACCCTGTTACTGGGAATTAAATGAGCCTAGCCCCTGGCAAAGGGCTTTAACATAGGACCTCAGCATTTGCCTTTTTTATAGACCTGGGTTTCAATCCAGCCTCTCCTCCTTATGAGCTATGTGATGCTGGGCAGTTCACTTGGTAGGCCTCAGTTTCCTCATCTGTGAAGTGGGCATCGTATCAGGGCCTCCCCCACAGCAAGGCCGTGCATGTCACATGCTGAGCTCAGAGTCTAGTCCAGGTGAACAGTCGTTTGAGTGTCGGTGAGGGAAAAGTGAGAGGCCCAGAGACCAGGACATGGAGAGAAATACAGGGAGATCGGGCTAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGACCGAGGCCGATGGATCATCTGAGGTCAGGAGTTCGAGACAAGCCTGGCTAACATGGTGAAATTCCGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGATGCTCCTGAATTCTCAGCTACTCAGGACACTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTACAAGAGCCGAGACTGCAACACTGCACACAAGCCTCGGTGACATAGTGAGACTCCGTCTGAAAAATAAAAAAAGTAATCAAGAAAAAGAAATATAGGGAGATGGGGGAGAGGAATGGGCTATCCTTTCTGCCCAAGGAAATGGAGATGTAGCTTGATGGCAGCTCACATGGAGAGACTGAGTGATGCAGCAGAGTAGGCACTGAATAAATGATGGTGAGTGAGTGGAAGAGATGCACAAAGAATGAGGGAGGTAGGGAGGAAGGGAAAAGGGTGAGACAGAGACAGAGAGACAGAAAGAGAGAGAGAGAGACAGAGACAGAGAGAGAGAAGACCCAGAGGCATAGCCTTAGGTGAAGACAGGGGGAGAGAGACACAGAGAGAGAGACAGAGACAGGGGAGGGAGATAGAGATGAAGGGAGAAGATCTAGAAAAAGTAAAGTGAGGTTTCGTTCCCCAAGACCTGGGCTAGAACAACTGTCCACAGTGTGTCAGATGACAATCCAACTCTCGGGGGAAGGCCCTGGCCTCTCCCAGCCCCCGGTGGGATGAGAGAGAGGGAGGCAGAGGGCCAGAGCTGGGGCCGTAAAACCTCCAGTGACCCGTTTGCCTTCCCTCCTTCCCCCAG
Seq C2 exon
GTGAACGGTGTGCTCACAGCCTTGCCTGTCTCTGTGGCCGACGGGCGGATTTCAGTGACCCAGGGTGCATCGAAGGCACTGCTGGTGGCTGACTTTGGACTGCAAGTCAGCTATGACTGGAACTGGCGGGTAGACGTGACGCTGCCCAGCAGCTATCATGGCGCAGTGTGCGGGCTCTGCGGTAACATGGACCGCAACCCCAACAATGACCAGGTCTTCCCTAATGGCACACTGGCTCCCTCCATACCCATCTGGGGCGGCAGCTGGCGAGCCCCAGGCTGGGACCCACTGTGTTGGGACGAATGTCGGGGGTCCTGCCCAACGTGCCCTGAGGACCGGTTGGAGCAGTACGAGGGCCCTGGCTTCTGCGGACCCCTGGCCCCCGGCACAGGGGGCCCTTTCACCACCTGCCATGCTCATGTGCCACCTGAGAGCTTCTTCAAGGGCTGTGTTCTGGACGTCTGCATGGGTGGTGGGGACCGTGACATTCTTTGCAAGGCTCTGGCTTCCTATGTGGCCGCCTGCCAGGCTGCTGGGGTTGTCATCGAAGACTGGCGGGCACAGGTTGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.2=72.6)
A:
NA
C2:
PF0009420=VWD=PD(47.5=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGATGGCCGGAAGTTTGA
R:
CGCCAGTTCCAGTCATAGCTG
Band lengths:
345-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)