DreINT0010747 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36531422-36534377:-
Coord C1 exon
chr15:36534049-36534377
Coord A exon
chr15:36531999-36534048
Coord C2 exon
chr15:36531422-36531998
Length
2050 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TCTTTCTGATTTCTGGTCAGGTG
3' ss Score
8.71
Exon sequences
Seq C1 exon
ATCCATGTAAAAACATCCGCTGTCGAGAGAAAGAGACGTGCAGCGTTGAATCTGGTAGGGCTGTTTGCGTGCCCCTGTACCGCAGCAGCTGCTGGGCATGGGGCGACCCGCACTACCACACCTTTGACGGCTATGACTATGACTTCCAGGGCACCTGCAGATACGTCTTATCTAAGACCTGTGGGCTTCTGAGTGGACTGGAACCTTTCTCTGTGACCCAGAGCAATGAAAATCGTGGCAGCCCTGCGGTGTCTTTTGTGCGAGAGGTGGAGGTCATTGTATATGGCAACACTCTTACTTTGGTGAACCACCAGATGGCACAAATCATG
Seq A exon
GTAAAGAGCTCCTTCAGATATTTGTATTATTGTTAGTCGCATCTATTCAGTCATTTTTTATTATTAACATTAGCTAACATGATTTGACAATGATCAAGATTTAATATAATGTAATTAAAAATATATAATTTAACATATATGTATTTTAGTTTTTATTGATCTTAGCTGTTCATCTCGCAATATCCTAATATATATTTAAAGGTCATGAGAATATTCACAAGAGTGTATAGATGTTTCCCAGTGATGGGTTGCAGATGGAAGGGCATCCGCTGCGTAATATTCAATATTTATTCATTCATTTTCTTTTTGGCTTAGTCCCTTTATTTATCGCGGGCCACCACAGCAGAATGAACCGCCAACTTATCCAGCATATGTTTTATGCAGAGGATGCCCTTCCAGCTGCAACCAATCATTGGGAAACACCCACACACTCTCATTTACACACATACACTATGGATAATTTATCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTTGTGGGGGAAACCGGAGCACCTGGAGGAAACCCACACGAACATGGAGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCAGGGCTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCCCTACCCACTGCGCCACCACGCCGCCCATCCTAACAATATTTTATTTATAATTTACATTTTATACATGTTTTAATATAATATTAACTGAATACAGCTAAAATGGCAACTGGTTTATCACTTATACACTCTTACTGAACAAACACAAAACATACATGCATAGGTTTCCTCCAGGTGCTCCGGTTTCCCCCACAGTTCAAAGACATGCACAACTGGTGAATTGAGTAGGTTTCATTGTCTGTAGTGTATGAGTGTGTATGGATGTTTCCCAGAGATGGGATGCAGCTGGAAGGGCATCCGCTGCGTAAAAGCTTGTGCTGGATAAGTTGGTGGTTCATTCCGCTGTGGCGATCCCTGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATAAATGAAGCAACGAATTAATAAAAATTGAATGGTAACATGTTTGAAATATTTTTAATATTTTAAAAATGCTAATGTTTAAATATATTTATCTTAATGTGTCAACCTATGTATATATTCTGAATTATTTGTTAAATCTGTGGGATACAGTAAAAAGGATTAAATAAATTCTTCTTTCCAGGATATTTTGTCACCTTACTTTAAGGTACAATTCTCACTATAAACAAACTGTTAATTATGATTTTTGCTTCAATAAAATTTGAAACTGCTGTTTATAACCAATATCCACTACCTAATAGTGAGAATTAGTACATAAACTGGAATGTTACCGGATATTTTATCATCATGGTTATTACAGTATTATGTAATATTGTGTTTATATTTATATAATGTGTTTATTGGTGTTACATTTGTATTATAATGTATACATTTTTATTTAAATTATATTATCTGTTAATATGTACAGTTAAAGTCAAAATTATTAGCCTTCCTGTTCTTTTTTTTTTTTTTTTTTTACTTTTTAAAAATTTCCCAAATGATGTTTAACAGATTAAGGAAATTTTCAGAGTATGTCTGGTAATATTTTTTCTTCTGGATAAAGTCTTATTTGTTTTATTTCGGCTAGAATAAAATCAGTTTACCCTTTAATATTTGTCTACAGAACAAACCATATTTATGCAATAACTTGCCTAATTATCCTAATGTGCCAAATTAACCTAGTTAAGTCTGTAAATGTCACTTTAAACTGTATAGAAGTGTCTTGAAAAATATTTAGTAAAATATTATGTACTGTCATTATGGCAAAAATAAAAGAAATCTCCGTTAAACAAAAATAGGAGAAAAAATATACAGGGGGCTAATAATTCAGGAGGGCTAATAATTCTGACTTCAACTGTAAATAACAAATATAGATCACTGATGATGTCATTATAATTTCTTAGTCATTCATTTTTTTTACTTGTATATTAGAATATCTTTCCACTTTAATCATATAATCTTTAAGCATGATCTTTCTGATTTCTGGTCAG
Seq C2 exon
GTGGATGGTCTGCTGTTCTATCTTCCTCTTGATCTTCACGACGGCCGTGTGAGGGTTCGACAGAGTGGTACAGCAGCTCTTTTAGAAACTGATTTTGGTCTGAGCGTCTCTTATGACTGGAACTCAAAGGTTGTCCTGCAACTTCCCAGTAGTTACTATGGACTTGTGTGTGGCCTGTGTGGAAACTTCAATAATAATAACGCAGATGAGCTCAGAGACCCTACTGGAAGTCTTCTGCCAGGCGTGTACCAGTGGGCAAAGAGCTGGAGAGCAGAAAACAGCAGCACATCTGCATGTCAGGATGGCTGTGACACCAACTGCCCTGTTTGCCCTCCCGAACTGGTTGCTCTCTATAAAACAGATACTTTCTGTGGACTCTTGACATCTGCAGGTCAGAGTGTGTTTAATGCATGTTATGCTAAAGTGAATCCACAGGCGTTTCAGCAAAGCTGCGTGTTTGATTTGTGCTCCAATAATGGCGACCGGAGACTTCTGTGTCAGGCTCTGGAGACCTACGTCCAGCGGTGTCGACAAGAGGGAGTCATTATTACAGATTGGAGAAGGAAATTCAATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=71.8)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.4),PF087426=C8=WD(100=39.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]