DreINT0013159 @ danRer10
Intron Retention
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10307898-10312169:+
Coord C1 exon
chr6:10307898-10308097
Coord A exon
chr6:10308098-10311916
Coord C2 exon
chr6:10311917-10312169
Length
3819 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGA
5' ss Score
7.82
3' ss Seq
GTCTCTTCCTCTCTCTGCAGGTA
3' ss Score
14.2
Exon sequences
Seq C1 exon
CTCTGATGTATGCTAGTATCTTCGGGAATGTGTCCGCTATCATTCAGCGATTGTACTCTGGAACAGCTCGGTACCATCTGCAGATGCTTCGGGTCAAAGAATTCATTCGCTTCCATCAGATCCCCAACCCGCTGAGACAAAGACTCGAGGAGTACTTCCAGCACGCTTGGACATACACCAACGGCATCGACATGAACATG
Seq A exon
GTACGAGTCTGGCTCTTTTCCTTGACTTTGAAGTTCTGTCATTGAATGAAGACATGTAATGAACTGTTGGCATGTACTATTTGTGTGTGTCAGTGTAATAGCAATGTATCCTAATCACACATTATTAATGTGAAATGTGTTCATGTGTCTACGCAGTGATCTGATATGCATTGTCTCTTTCTTATACGCACTCAAATGGACTGTCTTCAACACCCTGGTGAGCAGGAGGTATAGATTAATGTTTGCTTTTCATCAAAAAGCTACAGTATTTCTTTCTGAAATGTTTCCTATGATGTCTGTATATTTTTAAACTGTGCCTTTTTGAGGTAAGCATAGTCTAAAAATATAATAGCTAATCAAAGGAATTTAATCAGTTTTGAAAAGTTTTTTCAAGACTTAAGGCCAATTTATACTTCTGCTTTGAGTCCATGTGGTAGGCCATACCCTGACCTCTCAAAAATGTAATTATACAGTACATTCTAACAATGCAGAGAGAAAGATCTGTTATTGGCCGGCTTGGTTGCGATTACTAGTGTGGGCGGGGCTAAGAGTCAAGGGGGCGGAGCAAGGCTGATGGCACAAGTGCCTTAACACCGAAGTTGGCGAGAGCATCCAAGTTCTCTCTGGCCACCCTGGCGACAACGGTGTCTGCCTTCACAGCTTCTGCGGCAAGAACGTTAAAATTCGCTACATTGTATTTAAAGGAGCCGTTGCAGTATATCGGCAAATCAGTTACATTCCCACATAAAAACCTGCTTTCTCTTTAACAATGAAAGATCAAGTCGTTGCTAGTGGTGTGGCTTTAGTTCATATGTATGAAATATTCTGAAGTTGTTATAGTTAGCATGAGATTCCCGCTTCTTTTTTTAAAGAAATGTATACGCTCACCGGCCTCTTTATTAGGTACACTTGTCCAACTGCTTGTTAAAGTAAATTTATAATCAGCCAATCACATGGCCGCAAATCAATGCATTCAGGCATGTAGACATGGTCAAGACGATCTGTTGCAGTTCAAACCGAGCATTAGAATGGGAAAGAAAGTGATTTAAGTGACTTTGAACGTGGCATGGTTGTTGGTGCCCATCGGGCTGGTCTGAGTATTTCAGAAACTGCTGATCTACTGGGATTTTCTTGCACAGCCATCCAAGGGTTTAAAGAGAATGGTCAGAAAAAGAGAAAATACCCAGCGACCGTTCTGTAAGAGCAAATGCCTTGTTGATGTCAAAGGTTAGAGGAGAATGGCCAGACTGGTTCGAGCTGATAGAAAGAAAATTTAACAATAGAAGATTGGAAAAACGTTGCCTGGTCTGATGAGTCTCCATTTCTGCTGCAACATTTGGATGGTAGGGTCAGAATTTAGTGTCAACAACATGAAAGCATGGATCCATCCTGCCTTTTATTAACGGTTCAGGCTGCTGGTGGTGTAATGTTGTGGAGGATATTTTCTTGGCATACTTTGGGCCCATCAGTACCAACTGAGCATTGCGTCAACGCCACAGCCTACCTAAGTATTGTTGCTGACCATGTCCATCCCTTTATGACCACAGTGTACCCATCTTCTGATGGTTACTTCCAGCAGTAAAACACGGCATGCCATAAAGGGTGAATTATCTTAAACTGGTTTCTTGAACATGACAATGAGTTCACTGTACTCGAATGGCTTTCACAGTCACCAGATCCCAATCCAACAGAGCACCTTTGGGATGTCATGGAATGGAGATTCCCATCATGGATGTGCAGCCAACAAATCTGCAACAACTGCATGATGCTATCATGTCAATATGGACCAAAATGTTAAGTTTATGCCACAATGAAATAAGGCAGTTCTGAAGGCAAATGGGGGTCCAACCCGGTACTAGTAAGGTGTACCTAATAAAGCTAATAAAGTGGCCAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGTATATGTATATATATATATATGTATATATAAACATTAATGCACATCAGTAAAAACATTTTTTATGTATGTCCCTGTGAGAAAACATTGAATATAACTGGAAATACGGTGATCGCAATAATCCAACCCTTAGGAGCAACTGTGGTCGAAAGAGAAGATCAGAAGGCTGTATTCTCTGTAATAGTCTTAGGCGGTGGACTTCAACATTCCGATTGCTTGCTTGACTGGATTTCAACTCTCCTTGACGCCAACACCGGCAAAGATGCTTCACGCCACCAGCGTCCATAGAAAATGGATGACTTCTAGCTACTTTTACATTCTCACCGTTTTCGGTGCATTTTCACTGCCGCAGAGGAGCTCCAAATGTCAATCCTCCTGTTTTTGCCAGGATTTTCCCGTATTTGACCATTCTATCTCACTTTCATCCCATTTAAGTATTTTCCCCTATTTCTCCCATATTTGTAATCTTCCTATGAAAAGTGAAAGTAGCATCAAAGGATCGATCTCAAATGTGATATAATTGCAAGAGCTGTTGATGAGAATACTGATTTTGCTTCATTTTGGCTTGAAAGCACGTTGAAATGAATTTAGAAATAGCTGCATTCATTTAATTTCCTTTAAAGCTTGATCCTTCACCTTTCCTGTGTAACCTTTGAATCAGTCAATTCATGTGACGGTACTGACTGACAGGCACGCTTCATATAAAAACACAGTTCCCAGATCAGCTTCTGTACACACGATAATAAGAGGAGCGAAAGTGGACACTGGGATTTGGGTGTGTTTTAAACAGACAGATACACTAATTAATATATAAACATGCCCGTTCTGGTGTGTTTTATTTTCAAACACTAACAATTTTGTCTTTGGGAAAGTAATTGAATGCTTTCATTATAGTTCTGTGCATTCTTAAAGGGACACCTCTGTTATCAAACAAAACAGTGTATCAATTTGAGAGATTGGCTGCTCTTTACTATAGTAAATATAACTATGCCATATTTTTACATCCCAGTGTTGACAGGTATGCAGATAGATACTTTTATTTTGCGTTCCCGTCTTTCTTCCCTGAATGGATTTCTTTCTTCCTGAGTATGAGTTTGAGCTACTGCTACAGTAACAGTGCATGTATTTTTGATGTAAACTCAAAACACCAGCAAACAACTCAACAAATAATAACCCCAATGCCTACTAGCAGTTCAGAATTGTTATTGCAGGGCAACACAAAACACAGAGAACGCAGAAGTCTACATGCCCACAAAGGCATTGGCCCTGAGGTATGGGTACCACTTGATGCAGAAGTATAAATCAGGCTTATTGTTAAGTCAAACCACTAATGGTTAAGAGTACTATCACTCAATACATTTGGTACAAAATACTATTTCAGTTTTTTCCTATAGTTAAATCAGTTTCACTTTGATGACCCTGGCATTATTGGCATTATCTACTTATAAGGCATCAGATTCTGTGTAGTTAGTCAGATAGATTCATATGTTTCCATGCCAGACTTTGCTTGCTGATGTTCCAAATCCAATTTAAACGAGAAATATAGTGGTTTTTAGGCAATTTACTTTGAGTCGAACCACAAAAATTGGGAGAAAGCATAATTGGCAGCTGCATTTTCCTCTGCTTAATGTGCCGTATATCATTTAATATGAAGCCAAAACAAATCAAAGCCAAAAACAATGCAAAGCAGTCGAAACAAAGGGTCCCGGATGCATTTGTGTTTTGCTTCATCTTTTATGTATTTGCAGTTGAGGGAGACGGGGCTATATTAGCATTGTATAATCTGGGCTGGTAAAAATCTGCAACCGTTCTGCCCTTCATCTCCTCTTGTCTATTGGGAACACTCTTTCTGTTCTGTCCTTTTCTGTCTCTTCCTCTCTCTGCAG
Seq C2 exon
GTATTGAAGGGTTTTCCAGAGTGCCTGCAGGCTGATATCTGTCTCCACCTGAATAAAACGTTGCTCCAGAGCTGCAAGGCCTTTCGTGGAGCGACCAAAGGTTGCCTTCGGGCACTGGCGATGCGCTTTAAGACCACCCATGCCCCACCGGGTGACACTCTGGTGCATGGTGGGGATGTTCTCACTGCCCTCTACTTTCTCGCCAGAGGGTCTATCGAGATCCTCAGAGATGACATTGTGGTGGCCATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687:ENSDART00000151288:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]