DreINT0014406 @ danRer10
Intron Retention
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41131037-41132142:-
Coord C1 exon
chr11:41132011-41132142
Coord A exon
chr11:41131166-41132010
Coord C2 exon
chr11:41131037-41131165
Length
845 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCCCATGTGTGTGTCTCCAGCAT
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGTGTCCTGAGGGCCGCTGGGGTCTGGGCTGTCAGGAATGGTGTCCGGTGTGCGAGAACGGAGGCCGCTGTGACCGGCGTAACGGCACATGTGTGTGTTCTCCTGGATTCATCGGCAGATTGTGTCAGAACT
Seq A exon
GTAAGTAGATTCATTTATAAATTTTTTCGGCTTAGACCTTTGCTTAACAGGGGTCACCACAGCAGAATGAACCGCCAACTCATCCAGCATATGTTATACACAGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTTGCCTCACAGCAAGAAGGTTGCTGGTTCGAACCTCGGCTCAGTTGCTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCTGGTTTCCCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGTTGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGAAAGGGCATCCGCTGCGTAAAAACTTGCTGGATGAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGTTATACACAGTGGATGCCCTTCCAGCTGCAACCCAACACTGGGAAACACCCATACACACTCATTCAAACTTATACACTACGGCCAATTTAGTTTTATCCAATTGACCTATAGCGCATGTGTTTGGACTGTGGGGGAAACCAGAGCACCCGGAGGAAACCCACACCAACACAGGGAGAACATGCAAACATCACATAGAAATGATAACTTACCCAAACGAGGCTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGTTCTAACCACTGAGCCACTGTGCCACCACATCAGCATACGTTTGAATACTAATAGAAGGACAGACTTGTGGCTGATCATTTCTCTACACACTACCTTCATCTGTACATGTCCCATGTGTGTGTCTCCAG
Seq C2 exon
CATGTCCTGCGGGTCGCTTCGGTGTGGGCTGTCAGCTCAGATGTGTGTGTGATCTCGGAGTTCGCTGTAATCCTGTAAGCGGACGCTGCTCGTGTCCTCCAGGCTGGACGGGACACAACTGCAGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808:ENSDART00000109204:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.9)
A:
NA
C2:
PF126612=hEGF=WD(100=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTGAGGGCCGCTG
R:
CCTTCCTGCAGTTGTGTCCC
Band lengths:
260-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]