DreINT0014988 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28080026-28080414:+
Coord C1 exon
chr6:28080026-28080166
Coord A exon
chr6:28080167-28080255
Coord C2 exon
chr6:28080256-28080414
Length
89 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CTTTTCTATCTTTGCTTCAGCTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CAAACAGCAGACACAAAGAAGCAAGTTCCAACATTAACTGGTCAGTTTCGCCAGTCGCTTGACTCTTTGATGAAGACTCTAACTGCCTGTCAGCCTTTCTTCATTCGCTGCATTAAACCCAACGACTTCAAGAAGCCTATG
Seq A exon
GTGGGTTCAGTTCATCATTTAATCTGTTCTTCCACAGTATACATGCCTCAATTTTCTCTGAATGACCCACTTTTCTATCTTTGCTTCAG
Seq C2 exon
CTCTTTGACAGGGAGCTGTGTATCCGTCAGCTTCGTTACTCAGGAATGATGGAGACTATCCGCATCAGGAAGGCTGGATATCCCATCCGCCACACATTTGATGAGTTTCTGGAGCGTTACCGTGTGCTGCTCAAGTCCACTGTTTGTGATCCCCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGCATTAAACCCAACGA
R:
AACAGTGGACTTGAGCAGCAC
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]