Special

GgaINT0031403 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr9:2283212-2284446:+
Coord C1 exon
chr9:2283212-2283376
Coord A exon
chr9:2283377-2284293
Coord C2 exon
chr9:2284294-2284446
Length
917 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
TTGTCTGCTTTCTTTTCCAGCTG
3' ss Score
12.21
Exon sequences
Seq C1 exon
CAGACACCATGTGCTTACTCTTCCCAGGGCCTGGATACCACCAAACGGCTATCTACTCTGGGTGGACAGTTCAAGCAGTCCCTGGAAAAGCTAATGAAAATTCTTGGTCAGTGCCAGCCATACTTCATCCGCTGCATCAAACCCAATGACTACAAGAAACCACTG
Seq A exon
GTAATGATTTAACAATATGAGGTCTTGTTTTCAGTAAACTTCTTAATGAGAAAAAGCTGTCAGTTGCTGTGTAGGATTTTCTATCTGTACTTCAGCCAAGAACTGGAGGGCAAGGTATTACTGGAGTAAAAAGGGCAGTATGATATAGCAAAGTTCATTTATAAAATCATCTGTAAATCCATTCTAGAGTGATGGGTTGCTAAAAGAGCACATAGTTGTACTACTGGGAGCAACTGTAGAAGCCATTCTTGTAAACAGAGAACTGGAGAGTTTCCAGCCCCCAACAAGGAGACAAATAAAAACTGAGATCCAGCAATGACTAGACCATGAAACAACCTGAGAGAGATGAAGGAAGCTGTGGGTGAGATGGATGATACAGCTAAATTTGACACCACAGGAGAAGAGGCTCAAGTTTGTTATTAAAACACTTAGCTAGATCTTGGGGGATCAAAACCCATTTCTACACTAAATCCTTGTTTGTTGTTGGTCGAGTGACTTAATTGTTTTTAAAGTTGTGCATGTGGATTAGTGAGCCTATTTTTAATCTACATTACAAGAAACTAGCAGCAGTCATGATGTACTAAGCCCAAAGGACTTAAGTTTCTATTTCAGTTACTTGCACCTGCAAAACAAAATGATCATTCACCTGAAATTACATTTATAGAATTGAAAATGGTTGCTAAAGCCAGTCAGAACTTAATAGACTGTTTCTGCTGCCAAACATATGGTGAAGACCCTTTAAAGTGGCATGTCTATGCCCGTAATTAATTAATCTGGGACACTGAAATAAGAGTACAATTAAGAAAAGCATAGCAGTCCGTTTTGCAGCTGAGTTCTCAGGTTAATAGATGTGTTCTGAAGAACGCTGCATGTGCAGCCTCTTTCTGTATTAACTCCTTGTCTGCTTTCTTTTCCAG
Seq C2 exon
CTGTTTGACCGGGAGCTGTGTATCAAACAGCTGCGATACTCAGGGATGATGGAGACCATTCGGATCAGGAAAGCTGGCTACCCAGTTCGCTACACTTTTGAGGAGTTCTTTGAGAGATACAGAGTTCTCCTGCCGCGGTCTGCTCTAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(8.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACCATGTGCTTACTCT
R:
CGGTTCTAGAGCAGACCGC
Band lengths:
318-1235
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]