RnoINT0097420 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24778337-24784331:-
Coord C1 exon
chr18:24784194-24784331
Coord A exon
chr18:24778490-24784193
Coord C2 exon
chr18:24778337-24778489
Length
5704 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
CCTGTCTTCTCTACCCACAGCTG
3' ss Score
11.57
Exon sequences
Seq C1 exon
CCATCAGACTCCACCAAGCGCTCCGTCACCCTCTCGAGCCAGTTCAAGCAGTCTCTGGAGCAGCTGATGAAAATCCTGACCAATTGCCAGCCCTACTTTGTCCGCTGCATCAAACCCAATGAGTACAAGAAACCACTG
Seq A exon
GTAACTAGGAGGGACTGGGGTTGTGCCAGGAGGGGGCAGGGCTCTGAGGGGCTGAGTTTGACACCTAGAGTTGACACCCAGGGCAAGGCCAGCATTATAGCTGTCACTTGTCCCCACTTTGCAGACACTGGAAGGAACCGGTTGCAGCTCAGTGGCCTGCACACTCACCTCACACTGACTTCCACACACTCACATCTAGGGCCTCAGCCCATCCATCGTCAGCTGTGTGTGCTTAATTAACCAGGCTCGGGGCTTCTCTGGGCCTCATTAGTTACTGTCTCCCACAAGGTCAGCTTACTCTTGTCTATAGGATGTTAGACATGAAGCTCTGATCACCAGAATGCCCACACGACCCAAAGTGTCTGTGGAAGGTAAAACATCACATCTGTAGGAGGGCATTCGGCACTGACAAGCTCTGGCAAGTGAACACACCCAGCAGAAGTCGACTGGAACTTTATGATTTCAGGATTCTGCACTGTGCTCATGTTGGTCAGACTTTGGCCTCACATCCTTACATGTGTATGGAGCAGTGCCATTTGGCCTCTTGAGCCAAAGCTAACATTTGGAGAGGTGAAGCTCAGGAGAATCAAAACTGACATTTGGGAACTAGAAACTGGAAACTTACAGTAGAGGTTTACAAGATGGCATTTTCTCAAAACCCAGTGGTCTTGTCTCAGCTAGTCTTTTGATAGAAGAGACACTGTGTTTCTCAGAAAAGGTGTACCTAGTCTAGGAGCAGATGGTATGTACTTCTTCCACACAAAAGCCACACTTAGCAAAAAGCATCAACTATTCTAAATGTCAGTACTGAAGAGTCACATCTGTAGGAGCTTTCTCCACATGCAGTGGGGACAAAAGGAAGCCTGCGATACCCTGATCTATAGAATCCCCCTCCCCAAAACTCTGGAAGCACAGGGAGTCCCCAGTTAGGAAATATGGTTTGCAAAGCCAAAATTACTAAACACCATGTCATAGGGAATAGGAAGATATTGGTGTATGCATGCTAGTGTATATATGCACGTGTGTGTAAGTGTGGGGTGTCGCATATGTGCACTCGGATGATAGAGTTCGATATTGCGTACCTTCCTTTATTGCTCTCCGACTTACCTAGTTTTTAAATTATTTTGTGTGTATGGATGTTTAGCCTGCATGCGTGTACACCCCATCAAGTCCAGAACTGGAACTATGGACAGTTGTGAGGCATAATTCTGGCAGTTCTATAACCAAGCTTGTTTTATAAAAGATAGTATAGATAGCTACTGTAGACAGCAGTCGGGCAACTCTTTCCCTCTGCTGGGAAAACTGCCTTCTCTTAGAATTCCTGCAGGTGGCCACACTGCCTGCCCTGGGCCGAGGCTCACATTCTGTGGGGTGTCTCTGACCAGAATTCATCTCAGTGGCTGCAGCTTCCCGCTGTGAACTGTAGAGGAGAGGCCTAGGGTGAGGACCAGATTGAAGCTCAGCCACCCAAGAGTGTGGCCTTGCCCTCCAGGTATCTTTATTTTGTTTGTTTGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAACAGTCCTAGCTGTCTTAGAACTCACTCTGGAGACCAGGCTGGCCTCAAACTCACAGAGACCCACATTTCCCTCTGCTTCACCGGCTGGGATTAAAGGCACGTGCAACCACCCCAGGCACTATCTCATCTTTAAGTCAGAGCCAATCCATCATGTAGGTTGTTGTGGAGATTAAATAAGAAACCACGGGCTCGCTCACACTTCGCCGCCGGCTTATACTGCGTTTCTTTCCGCTGCTCCGTCGTCCCGTCCTCTGCCGATCGCAATGGAAGAAGAAATCGCCGCCCTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCCCAGGGCCGTGTTTCCTTCCATCGTCGGGCGCCCCCGACACCAGGGTGTCATGGTGGGCATGGGCCAGAAAGACTCGTACGTGGGTGATGAGGCCCAGAGCAAGAGGGGTATTCTGACCCTGAAGTACCCTAATGAGCACGGCATTGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCTGAGGAGCACCCGGTGCTTCTGACCGAGGCCCCCCTGAACCCCAAAGCTAACAGAGAGAAGATGACGCAGATAATGTTTGAAACCTTCAATACCCCAGCCATGTACGTGGCCATTCAGGCGGTGCTCTCCTTGTATGCATCTGGGCGTACCACTGGCATTGTCATGGACTCTGGTGACGGGGTCACACACACAGTGCCCATCTATGAGGGCTACGCCCTTCCCCACGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACTGAAAGGGGCTACAGCTTTACCACCACTGCTGAGAGGGAAATTGTTCGTGACATAAAGGAGAAGCTGTGCTATGTTGCCCTGGATTTTGAGCAAGAAATGGCTACTGCTGCATCATCTTCCTCTTTGGAGAAGAGTTATGAGCTGCCTGATGGGCAGGTGATCACCATTGGCAATGAGCGCTTCCGGTGTCCAGAGGCTCTCTTCCAGCCTTCCTTCCTGGGCATGGAGTCCTGTGGCATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCGCAAAGACCTGTATGCCAACACAGTGCTGTCTGGTGGTACCACCATGTATCCAGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTGGCTCCCAGCACAATGAAGATTAAGATCATTGCTCCTCCTGAACGCAAGTACTCAGTCTGGATTGGCGGCTCCATCCTGGCCTCACTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCAGGCCCCTCCATTGTCCACCGCAAATGCTTCTAGATGGACTGAGCAGGTGCCAGGCATCTGCTGCATGAGCTGATTCTGAAGTATCGATTTGCCCTGGCAAATGTACACACCTCATGCTAGCCTCGTGAAACTGGAATAAGCCTTTGAAAAGAAATTTGTCCTTGAAGCCTGTATCTGATATCAGCACTGGATCGTAGAACTTGTTGCCGATTTTTGACCTTGTATTCAAGTTAACTGTTCCCTTGGTATATGTTTAATACCCTGTGCATATCTTGATTTAGTCCTTAGTTCATGTGGCTCGGTCACTTGGTGGCTGGGGAGATCTGTGGAAAAGTCAGTCAGTCCCCAGCCTAGTGGATCTCTGTGAGCACCATGTAGTGATCTGTGCAGGGTATTAACCAACAGCAGACTTCCAGGATTTCCCGAGGCTGGCAAGGGTTCCTGAACTAGTTACCACTTCTTTTCTTGCCAGTCTAACAGGGTGGGAAAGTCCGAGCCTTAGGACCCAGTTTCTGTTCTGGTTTTTTCCCTCCTGACCGCCATGGGTTGTTACTTGCCTTGAGTTGGGAACGTTTGCATTGACACCTGTAAATGTATTCATCCTTTTAATTTATGTAAGGTTTTTGTACTCAATTCTTTAAGAAATGACAAATTTTGGTTTTCTACTGTTCAGTGAGAACATTAGGCCCCAGCAACACGTCATTGTGTAAAGAGAAATAAAAGTGCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACCACGGGCTCTCGGGACATGCTCAGTCAATAACAGCTGGCTACACCCAGGGTTCACCACAGTGACCCTTACCAACCTGCCCATGGCTTGTCTCTTTACAGGGTGTCATCTCCCCTAGTACCATAGGTCGAAAGTAGCCTCCAGAGTCTTGGAGACAGAAGGGAAGCTAAGCACCATGCCCAGATTCCTGTCAGTCATGCTAGCCTCTGATCTTAGCTCCCTCTTCCCATCCAGTTGTTTCTGTCCATCCTGTGGGAGAGAGGACAAGTAGAACCTCAAGGGTCTATGCCTCTGAGTAGATTCACGTCTGCCTCCTGCTATGGAGAAGTGTTGTATTGCTGCCTTTATTGGGACAGCATCTAGACTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTAGGCCAGAGGACAACTTCAGATGTTGTTCATCAGGCATTGTCTTAGTTAGCACTTCTATTGCTGTGATAAAACACCATAACCAAGAGCAACCTGGAGAAAAGGGTTTTTTTTGCTGTCGTTGTTGCTGTTTTGTGTGTTTGTTTTGCCTTGTCTAAGACAAGGCTTCTTTGTGTAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGACGAGGTTGGCTTCGAACTCATAGAGATCCTCCTGCCTCTGCTCCCTGAGTGCTGAGATTAAAGGCATGTGCCACCACCAGCTGAGAAAGGGATTTATTTTGGTTTATGGTTCCTTCTCATAGTCCAACACTCTGGGAAGTCAGGGCAAGAACCCCGAGGCAGGAGCTAATGCAGAGGCCATGGAGGAGTGTGGCTTCCTAATAACGCTTGTTCTTCATGGCTTGCTCAACTTGCTTTCTTTCTTTTTCTATTTTTATTTTATGTGCTTTTGTATTTTGCATCCACAAGTATCTGTGTGAGGGTGTCAGATCCCTGGGAGTAGAGTTACAGACAGTTATGAGCTGTCATATGGGTGCTGAGAATTGAACACAAGACCTCTGGAATAGCAGCCAATGCTCTTAACCACTGAGCTGTCTCTCCATCCCCAACCTGCTTTCTTACACATCTATCCCAAGGGTGACACCACTCACAGTGGGTCAGGCCCTCCCACACTAATCACCTTTAGAAAGTGTACCACAGACCAATCTGGTGGAGGCATTTTCTCAGCTCAGGTTCCCTTTTCTCAAATGACTCTATCTTGTGTCAAGTTGACGCAAAACTAAACCGGCACAGGCATCGACCACCTTATTTGTGAGACAGGGTTTCTTCATGGCTAAGTTGGCTGGCTCGTAAGCCCCAGAGGGTCATCTGCTGCTAACTGTTCAGAACTGGGACTACAGACACACACCACCATGCCCTACTTTTACTCATGTTTGCACGGAGCTATCTCTCCAGCCTGCAAATGTCTGTCCTATTCCCGGTACTATATATGGCTTAAAAATGACAGAAGCATAGGGTTCTTATGGGTCTTACAGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACATCTCACTATATCCAAGGCTGGCCTCATGATGCTCCTGTTTCTGCTATGGACCAATCCAATTGGCCTGAGTTCCAATTCCTAACTATTGCCTTTTATGTCCTTGGAGACAATTTCAGCCACTCCCACTGCTGTCTTCAAAAGGCCGTTTGAAATCTGGGTACAGCGTTATGTCTTGTAATTCCAGCACATAGGAGGTAGAGCAAAGTGTCATGCTCGGCTACATGTCAAATTCTGGGCACACACCTAATAAAAACAGTCATTTTAGTTCAACCAAGCATTTGTTAGGTTCTTCTGGTCTTTGGGGGATGGCGGGATAGGTCCCTAGGCATGCTGAGCTCCTCTGAGGGCAGCAACGGTGAGTGGTTTCGAAGGGTGGGATCCTAGGTTCCTCAGCCCTGTCTTCTCTACCCACAG
Seq C2 exon
CTGTTTGACCGAGAGCTGTGCATTCAGCAGCTGCGTTATTCCGGCATGATGGAGACCGTGCACATCCGCAAGTCAGGCTTTCCCATCCGCTACACATTCGACGAGTTCTCACAGAGGTTCCGCGTGCTGCTGCCTAGTCCGGAACGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]