DreINT0016117 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47454911-47456892:-
Coord C1 exon
chr15:47456768-47456892
Coord A exon
chr15:47454923-47456767
Coord C2 exon
chr15:47454911-47454922
Length
1845 bp
Sequences
Splice sites
5' ss Seq
AGTGAGAAC
5' ss Score
-15.17
3' ss Seq
TGAGCAGGTTAGGCGTTTACCAA
3' ss Score
-16.25
Exon sequences
Seq C1 exon
GTTTTGTCTGATGGTGAAGAAGGGCTACAGAGACCCACCGTACCACAACTGGATGCATGCCTTCTCCGTCTCACACTTCTGCTACCTACTGTACAAGAACCTGGAGCTGTCCAACTACCTCCAGT
Seq A exon
GAGAACACACACAGATGTATACATGCATGCAGACATAAACAAACACTCACACATATGCATGTACACACATACACAAAATTACACACACAAACACACAAATAAACTCACACTTCGCTCACTCTAACACACAGACACAAACAAACAATAATACAAGTGTGTGTCGTACACATACACGCAAAACACACCCTCGTGCTGCAGTTCTTACTAATTTTCGTTTCAATTTTGGCACCCAAGTGACCGAGATGTAACAAGAGCATACGGTCATTTTTCAAAATGAAAGATTTTTCAATAATTCATATTAAACAAAATAAATGATTGTTCAGACTCAGATTATAAATAAAACTGAAGTAATTCATGATTGTTTGTGCGGTCCGGTACCAGTTCATTTATAGACCAGCGCCGGTCTGTGGTCCAAGGGTTGGGGACCACTACTCTAGCACGAACAGCATCTGCTCTGCCAGCATCACGCACCTCTTTCTAGTTGAATTGAATAGATTTTTAGCAGCTGATGACGCGATGCACTAATGTAAACATTCTAAGCACATCGCTTTGATCGTAGGCTTTAGAGCAGTGTTTCTCAAACGTTTTTCATCAAGTACCACCTCAGAAAAAAATTGTCTCTCCAAGTACCACCAAAATGAGAAGTATTGAAGTACAGTAGCGCAGTTCGCCCAGTAAAGCAGCTCCAACTCTACACAATTAAAATATGTGGCAGATTACATCAGAAATCAGCCTGATCTCACGAGAAAACGTAAGTATTTTACGTTTTGCCAGTTTAGTGGCTAATTCGAGTTCAGTCGTACGAAATGGTGCGATTTTAAAAAGGAGGCGTGGCACCTGACCCCACCCCTAACCCCAACCGTCATTGGGGGTTACTAAATTGTACGAATTAGATCGTACGAATACGAATTAGCCACTAAATGAAAAAGTTACGAATTGCCGTGAGATTGTGTTGATATAGGCTATATGTCATATTATATACATCATTTTTGATAAATTTTGAAATGTGTGTAGCATGTACATGACATATTTCATTCCTCCGCGTACCACTAGAAGGAAGCCTGCGTACCACTAATGGTACACGTACCACAGTTTGAGAACCACTGCTTTAGAGAACAGCCAGTACTGATCGCATTGGTGTTATCGTACGCATCAAATGATTCAAATTGTATTAATTTTTTCTTTTGTCACTCAGTGATTCCTCCGCGTACCACTCGAAGTAAGCCTGCGTACCACTAGTGGTACACGTACAACAGTTTGAGAACCACTGTTCTAGATAAAGTAGAAGAACGGATAACATTTGAGGGGAAAGTGCTTCAAATCCGCTATGCTCACGAATCACGAACTGGATTGTCACATAAAATTATAATCTAGTCTAAATAAAATTAAAGTGAAATAATTAGTTTTAGAGATGCTGTTATAACACTGTTGCGTCGTTCAACTACAATTTAATTCATTTAATCAAATAAAGGGCGAGGCAGTGGCGCAGTGGGTAGCACGTTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCATTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCACAGTCCAAAGCGGTACAGGTGAATTGGGTAAGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGTGGATGTTTCAGCTGGAAGGGCATCCGCTGCGTAAAAGCTTGCTGGATAAGTTGATGGTTCATTCTGCTGTGGCGACGCCGGATTAATAAAGGGATTAAGCCGACAAGAAAATGAATGAATGAATAACCAAATAATTAGAATGAGCAGGTTAGGCGTTTAC
Seq C2 exon
CAATTCGCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(11.8=65.1)
A:
NA
C2:
PF0023314=PDEase_I=FE(1.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]