MmuINT0116856 @ mm10
Intron Retention
Gene
ENSMUSG00000110195 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:101508007-101508529:+
Coord C1 exon
chr7:101508007-101508129
Coord A exon
chr7:101508130-101508441
Coord C2 exon
chr7:101508442-101508529
Length
312 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CTTTTCTGCTCCCTACCTAGGGA
3' ss Score
10.34
Exon sequences
Seq C1 exon
ATTCTGCCTGATGGTGAAGAAAGGCTACCGGGATCCACCCTACCACAACTGGATGCACGCCTTCTCTGTCTCTCATTTTTGCTACCTGCTCTACAAGAATCTGGAGCTCTCCAACTACCTCGA
Seq A exon
GTAAGTGGCCGCCCCTCCCACATCTTCCAATGATGAGGTCCCACTCATGCGGCAGGTCCTCTACCTGGCCACTCATCCTGTCCTTTTCACTGGGGGGGGGTGTGCTGTACAGCCCCCACCTTCCATAAGGGGTCTGCTCAGCCATAGAGAATGACAGACCTGCTTCCCCGAGGGCTGCCACACTCCAAAGGAGAGCGGCTTACCGGAACCTTTTGACCGGGTGGCTCCTGGGCATCTCACCCAGCTGTCTGTCCTCTGATGCACCCAGGGAGGAAGCCTTGGTGACATTTCTCTTTTCTGCTCCCTACCTAG
Seq C2 exon
GGACATCGAGATCTTTGCATTGTTTATTTCCTGCATGTGTCATGACCTGGACCACAGAGGCACAAACAACTCCTTCCAGGTGGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000110195:ENSMUST00000163751:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(11.3=64.3)
A:
NA
C2:
PF0023314=PDEase_I=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGATGGTGAAGAAAGGC
R:
GAGGCCACCTGGAAGGAGTT
Band lengths:
206-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types