DreINT0017313 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71269408-71269680:-
Coord C1 exon
chr5:71269578-71269680
Coord A exon
chr5:71269472-71269577
Coord C2 exon
chr5:71269408-71269471
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TGTGTTTTCTGTTCCTGCAGAGC
3' ss Score
11.5
Exon sequences
Seq C1 exon
TTCCGTTGCATCATCAGCACAGCTGCCGGAGCCGCAGCCGCCGCTGGCTTTACAGAAATCTGTGTCCAATCTTCAGAAGCCCATGCCAATAACCAGCCCGGAG
Seq A exon
GTACGGCGTGTGTGTTGTACATGAGTAAAGGTCATAATCACGTGTGTGAGTGTGGTGTATGAGTAAAGGTTATAATCACGAGTGTGTGTGTTTTCTGTTCCTGCAG
Seq C2 exon
AGCACAAGTACAGGTGGACCAAAGCAATGGGCACAGCTCAATGGAAAGGCAGTCGATCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(17.8=100)
A:
NA
C2:
PF070016=BAT2_N=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGTTGCATCATCAGCACA
R:
TCTTGATCGACTGCCTTTCCA
Band lengths:
165-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]