HsaINT0016690 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131436620-131439061:+
Coord C1 exon
chr9:131436620-131436722
Coord A exon
chr9:131436723-131438988
Coord C2 exon
chr9:131438989-131439061
Length
2266 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GATTCTCTTCCTTCTTTCAGAAT
3' ss Score
10.88
Exon sequences
Seq C1 exon
TTCCAGTGCGACGGCCTCTCAGCCGCCGGAGTCGCTGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAACCGACACAGTCAATCAGTCAGGAG
Seq A exon
GTAGGTGCTGGGACCCCATCCCAACTGTTTCCTGGGCATGGTAGCCCCTAAATCTCTTTGTTGCTGGGGGATGGAAGGAGTTGCTACTGAGAAGTGTGGTTGTGCATGACCTGTCTATTCCAGAGGCACACCCGATGAGTGACTTTAGAAAACCGTCATGGGAAACCGTCAAGGTCAGTGGTTAAGAAATTTAATCTGCAGCTTTTAGAAAAAGACCTCAGATACAGACTAGGATACAGGCACCTACTTTGGTTCCTCTTGATTTACCGTGAGGCAGGGTCACTCAGGCTGGACTGCAGACTAGTTCAGGGTGAAGCTCCATGGAAGCGTCACGTGAGCTCCATGGAAGCTTGGGTCACAGGAAGACAAAAAGTGGCAGGTCACAAAAAGGTTCACTGGCCAGGTGAGTTTGAAAAACAAAACGAAGCGAGCTCCTTTACTGCGGTACTTCTCAGTGCCTTTCATATGCTAATACCTAATGTGACTCTCTGAGAAGAGGATATAATGGGCAGCAGTCCCTGAATTTATTTGTCCCAGGAAACATTTCTTTACCGAATGTCTCTAGGGACTAATGTCTCTCAGAACACGCTTTGGGAAATACGAAGCTACAATCCTTCATTTGTTGATATGTTTTAAGTGTTTTTCTAAGCAGAAAGTAATGATTTCACCAAGCAAGAGCTCATAACACACTCAGTCCATCAGAGCCTGGCTACAGGTTTCCAGAGATTGGCAGGAGGATATACTTAGCCAGAACTAGAAATCTAGATGAGAAGTCTATGAATTTTTTAGAAGACTAAAAGTAGACGTAGATATCTCATATTCACCAGCTCTCTTGACAGCGGGAATGAACATATTTTGGTTTTGCTTTGCTGCATGGGCAATATAAGGTCTCAAATGTCATCCCCTCTCTGCTTTAACCATACTCAGGGAAGTCTGTGGCTTTGCCAGGGCACCCTCTCCCCACCTAACACTGAACCGTGCTTTTAAAATTAAAGACAAGAAAAGAGGTCTATAATCATGCAAGATGCCCTTTTCCTTGGCCTAAATCCACTGGGACCCATAGGCTAGTCAGAGTATTTAGAGTTGAGTTCCTTTCTGCTTCCCAGAATTTGAAAGAAAAGGAGTGAGGTGATAGAGCTGAGAGATCAGATTTGCCTCTGAAGCCTGTTCAAGATGTATGTGCTCAGACCCCACCACTGGGGCCTGTGGGTGAGGTCCTGGGCATCTATTTGAATGAATTGCTGAAGGGGAGCACTATGCCAAGGAAGGGGAACCCATCCTGGCACTGGCACAGGGGTCACCTTATCCAGTGCTCAGTGCTTCTTTGCTGCTACCTGGTTTTCTCTCATATGTGAGGGGCAGGTAAGAAGAAGTGCCCAGTGTTGTGCGAGTTTTAGAACATCTACCAGTAAGTGGGGAAGTTTCACAAAGCAGCAGCTTTGTTTTGTGTATTTTCACCTTCAGTTAGAAGAGGAAGGCTGTGAGATGAATGTTAGTTGAGTGGAAAAGACGGGTGAGCTTAGTGGTTAGAGACTCGAAAGGGCACTGGACATAGGCAGGCTGGAGACTGGTCCTGGTCCTGCTGTTCTGCATCTGACTCAGTCACTCTTCTCTGAGCCTCAGTGGGGGATGTGACTAGAGCCTTCTCAGGGGGTGGTGAGCATTCAGTCAGGCTGGGTGTGCTTCGCATAATGCTGACCCTGGCGAGTTTTCAGCAGAGGTGACCTCCTAGGGTTCTCAGGAGGGGAGCTGTGCCTTGTAGAGTCACGGTCACTACAGAAAGTGCTGCAGCCAGCCCACCCAGATCAAGATCTGGCATGTTGGCCTTCTTTGTTCACGTTCCTCATTAGCAGCTGCGCAGTTTTAAAGACACATGCCGGAACTGGGCCTTAGTCTTTGTCGCTGGAGCAAAATAAAGTAGCTCTCTGTGGACACGGGAGGTTCCAGAGCACCGAATGGAGAGAAACAGGTTTGGGTCCTGGCTTTGCTGTGTCACTGTCTGTGTGACTTGAAGCTGGTCACTCCCCAAATCCTGCTCCTTGTCTGTAGAGTGGGCCTGGCATTTTCTCGTCCCTGGGACCGCTGTGTGGAGTGTGCGTTACAGGGAAGGTTCAGGGCTTTGCTGCTGCTCAGAAAGTGGTGGTGGATGGATCCGTATAGGGTTTGAATCTAAGGTGCTGGCCTCTCAGCACCTTGTTGTAATAGGCTGTTATTGTACAGTGGAATAAGGGAGCTGGCCCTCTTCTGATTCTCTTCCTTCTTTCAG
Seq C2 exon
AATACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGCCAGTAGGACACGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(17.5=100)
A:
NA
C2:
PF070016=BAT2_N=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains