GgaINT0123912 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6813985-6815145:+
Coord C1 exon
chr17:6813985-6814087
Coord A exon
chr17:6814088-6815072
Coord C2 exon
chr17:6815073-6815145
Length
985 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TGACTTTATTTTTTTTTCAGAGT
3' ss Score
9.88
Exon sequences
Seq C1 exon
TTCCAGTGCGACAGCTGCACAGCTGCAGGAGTCGCTGCTGCAGCAGGGTTTGCAGAAATCTGTCTCCAATTTACAGAAGCCGACACAGTCAATCGCTCAGGAG
Seq A exon
GTAGGCACAAGGCAGTCTCTGCTGCTGTTTCTCTGCACCCAGTCAGCTTGAGGGTTTCCTTTAATTGTCTGTGTTGCCATGTGCAAGTAAGAATTGTCAGACTATAACTTACAGAACAGCTGCTGTGTAATCAGTTCTTCTACAATTGCCTCTTGATTCCAAGTTGCTGTGCCTCAGGAATGCTGGGCTGCAGTTACAGTATAACTTTGTGCGCATTGCCTCTGTACCTTTCAAGTGTGTGGGGAAAGTCTAGTTTCAATCTAGAAAGAATGGCTGGAATGTGGGATGGCTGGTTAGCACTTGTAAACTATTTTTCTTTGGGTCTAATTCAAGTGTCGCTTGGTGACAACAGATCCAGCTCTTGCTCCCAGCCTGATGAGACTTGTAAAGAAGAGATGTGGTCATGTGGGAGAAGTAGCCAGTGTCAGGACCTGAAAAAACTACTGGCAAGTAAGAAAGCTTCCTCAGAGAGTGCAAGGACCTGTCCCCCTGTGCTGTGGATTCCATACTTCCAGTTCTAGCCCTAGAAGTTCAGGAAAATTAGGACAAGTTATTATTTGAAGAAGAAAAGTGTCGTTAATGCATGAGAAATAGGATAGCCTTCAAGCTGAGGTATAGCATGGAACAAATCTGGAAGATTAAGACATCCAGTTTGGGAAAATGCAACAGAACAAAGAGAAAGCTTTATTAGAGGTAGAAAAGGAAGAATGGTGAGAGAAAATAGTTGGTGGAGGTGAGAAGAGTATAGAGTTAAAAGGCAGGACAGAAGAGTATTTTCACTGTAGCATCATAGTGCACTGGTATGGGGTGCAGCTGACTTAAGCCCCAGCAAGAAACTGGGGAGACCTGTGGTAGCCAGTGATACCTGGATGATATAGAGGTCTGAACCGTAGCAGGTACTACCCAGGAAATGAGGAGTAATTAACTGATCTTTGGACATTTTTTTGTTTGTTTTGGTTTTGTTTTGACTTTATTTTTTTTTCAG
Seq C2 exon
AGTACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGCCAGCAGGACTAGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(17.5=100)
A:
NA
C2:
PF070016=BAT2_N=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]