DreINT0017636 @ danRer10
Intron Retention
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8727814-8728135:-
Coord C1 exon
chr10:8728025-8728135
Coord A exon
chr10:8727919-8728024
Coord C2 exon
chr10:8727814-8727918
Length
106 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
TTGTGTGTTTTTTCTCTTAGGCT
3' ss Score
10.57
Exon sequences
Seq C1 exon
AGAGAAAACCGGCGGCTACAGGAAGCCAACATGCGACTGGAGCAGGAAAATGACGATTTGGCTCACGAGCTGGTCAGCAGTAAGATCGCCCTGAGGAAAGATCTGGACAAC
Seq A exon
GTAAGCTTTTGAGCCCATTTTAAAAATGATTTCTTTCTTTTTAAGTTTCTGACATGGCTGTGGCTTCTGGTATGTACATTATAACTTTGTGTGTTTTTTCTCTTAG
Seq C2 exon
GCTGAGGAGAAAGCAGACGCGCTCAACAAAGAGCTTCTCATCACTAAACAGAAACTGGTGGAGTCGGAAGATGAGAAAAGACGACTGGAGGAAGAGTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967:ENSDART00000167821:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAACCGGCGGCTACAG
R:
TGTGCAGACTCTTCCTCCAGT
Band lengths:
214-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]