GgaINT0126218 @ galGal4
Intron Retention
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8871820-8874699:+
Coord C1 exon
chr17:8871820-8871930
Coord A exon
chr17:8871931-8874594
Coord C2 exon
chr17:8874595-8874699
Length
2664 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TACTCTGCTCTGTGTTCCAGGCA
3' ss Score
9.65
Exon sequences
Seq C1 exon
CGTGAGAACCGGCGTCTACAAGAAGCAAACATGAGGCTTGAGCAAGAAAATGATGACCTTGCACACGAACTGGTGACCAGCAAGATTGCTCTGCGGAAAGATTTAGACAAT
Seq A exon
GTAAGACGTTTTTAATGCTCTGCAGTGGAAACAAGGTGCTGGGGTAATTTCTAGTGACTCCTCGCATCGGAGGTATCACAAAGTATTTTCATACTTTGTAATATTTAATTTTCTGCTGACGGGGTGATAGACCCCATATTCTTTGTTCCTTTTGGAATGTATTTTCACTTGTGTTGTGTCTCCAGGGTTAGGGATTGCCTTTGTTTGTTTTATGGGACTACTGGGCTACTTGTAGTCCTGTCAGGACAACAGGTTGAGCAGATGCAGGTCGTCACATTGCGTGGTGTGGGGAAGCACCATTACAGGGTATCTCATATGCTGCAAAATGTGGTACATTTGATTTAGGTGGGTTAGGATCCTTTCCTGCATGCCCATACTGCAGAATAATGATGTATAGACCTGTGTCAGATACCCACAAGTAACAGGACCAGCAACTGAAATACAGATTCCTCTGAAAAGCATTCAAACTAGAGAGAGAGGAGAGGTTCTAAGCCTGTACTTGATTAGTTACTTCCTTCTCTATATTGAAAGAAAGCATAGCAGGAGCTAAGTCAAGTCTTGTTTTGCAAATTGTTACAAAAATAATAGGATTCTGTATTCTGTTTTTCTTCAACTGGTATTCAGATGAGTAAGAGCTCACAGAAAACAGGCTTTTGGTACCTAATAGATTTGAAAGTCTGAGTCTGTCTGACTCTCCGTGGGGTCAGATCCTCAGATACCTTAGGCAATTCTGGAAAAGTTTCTGTGGTTTAGGTTTGGCTTGTTGAAATCTGCCCACATGAACTCATCATCATTGGTTGTTTTCCATATCAGCAGAGTGCTCAGGAGGAAGTTTTGGATCTGCTTTGTTGTAGTAATTTTTTTAAGCTTGCTCTGCATTCTCTTCATTACATACTCATGTCTTGGAGATTTTCTTTGGATATGCTTTTGCACGTGACGTGGAAAGGTACTGGCATTTGTAGTGCACCTCATAGGCTGGGCCACATTTAGTCCATCTGCCTGGGGAGATGAGGAAAAAGGATCGAGTCCTTATGTTTGGTATTCTCGTTGTGTACTGAGATAAGGGTGTTTTTGAAATCTCAAGGGAAAATAACTTTCAAAATTGTGTAGTGCAGGAGTTGACAGGCTTAAAAATGTTTCAGCTTATCTGCTTCCAGAGAACGCAAGGTTTCCCACTGTCTCCTGGAAACTGGCTGTTGGAAACATACTCCTTGTAAATGGTGATGCTAATGGACGAAGTTGCTTTTAATGAAGTTTGTTTTATGACTTTCAGGTTTGTTACATCTACTGCTCTATAATGTTAAAAATGTGTGAAACATAGAAGTGTGTTCCATGCGGGTCTTCAAAAAGCATTGTTATGTTCACTTCCTATTACCTATGCTTTTCACTGTGTTGGAGATGGTTCATAGAAGGCTGTGCAGAATGCCCAGTGGTTGCTCTCAGAAGGTGGACTGCAGCAAAAAAAAAAAAAAAAAGTACTGAAGAAGTTTTTTGTGTCTGTTCTTAACTGTTGTTTGTGGCTGCTCTAGCCCATGTAAACCAGTTGTGCTTTTATTCGTTTAAATAGAGAGCTAAGGGAGGAACAAAACTGAGTAAAGTCTTTGAGATACACCAGTGGATATGTAACACTCATGCCTTCAAAGGTGGTAAACAATGTTGGTAGCATTCAGGTTATCACCCAGGAGGAGATAGGTAGGTTTGATCCTATGTTAGAACCCTGATTAATTCTTCTAATTGAAAGCTGCAATGGTAAGTTTCATTCTACTAGCCACATGTCCTGAAAGAAAAGTACCAAAGGAGATTGCTTAATACACCTTTTCTAATACTTTCATAGTGTCTCTGAAATTTTGCAGCCTAAAAGATCAAAGCAAAGCATTTGGAAATACGAGAATTTCCTTAATAACCTTTGCACTAGACCAGAAAATAGGCTTCATTTTTCTGCTATTGCTAGACTCCCATATCCCAGTTTCCTTTAACTTTAAAACAGCTTAAAAACCACGTATAATGAAAAGATGTTCTCTTTGCCTTTGCCATCTGTTTTAAAGGATCAGCAGGACTTTAAGGGACTAAAATTCACTGTTTGATTTTCTTCCTTTGAAGGGAAATGGTACAGCTACTTTCTGAACATTTTATATATCAGTTGAGTTATTGATCTATTTTTATGTTGAATTCATACACCTATTGGGAAGTACTGAGTTGCTGTGTATAAGACACGGAAAGCTGTCTTACTTTGCAGAGGTAGTTTTGAACAGCTTATGAACAGCCCAAGGTTTTACAGCTGTGCACCTTCGTTCTTAAAAAGAATGTAGCAAGAAATGATTGTGTGCTTCCTGGTGGGACATCTCTTTTCTTAAAAAAAAAGACTGACACAGTAAAGATGGTATTATGTCCATTGGTAGGCATCATGGAGGAGTTTTTTTAATGTTCTAGAGACATTTTTAACGAATTCTGTTTTCATTACAAGTTTGAATTGTAGATATTATTTTTCAGAAAAATGGTTTTCCTAATATTACTTTTATTAGTAACGATGAAGAGACTTCTTTTAATAAGAATGAAAGGACAGTGTTCTTGGCTGTGTCCTACTGGAGCTTCTACCCGTGGCTGCCTACCAGCATCCACACAGGGAAGCCTCTCCTCAGTGCTGTACTCTGCTCTGTGTTCCAG
Seq C2 exon
GCAGAGGAAAAGGCAGATGCTCTGAATAAGGAACTGCTGATGACCAAGCAGAAGTTGATTGATGCAGAAGAAGAAAAGAGGCGCCTGGAAGAAGAATCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225:ENSGALT00000001858:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.495
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]