DreINT0017921 @ danRer10
Intron Retention
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7286322-7286667:-
Coord C1 exon
chr2:7286577-7286667
Coord A exon
chr2:7286484-7286576
Coord C2 exon
chr2:7286322-7286483
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CATGTTGCATGCGCTCTCAGGCT
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTTGCCTGTGTCTGGCCCGGACCGTGAGCAGCTCAAAATTGAGCTCCAGCAAGTTAACCAACAGATCAGTCAGCAGACCCGCGGCATGGAG
Seq A exon
GTGTGCTTGAAATGCCCATTTAAATATCACTCACATTCACTGCTTGTTTTCATGTGGAGAAAATCTCAATGAACATGTTGCATGCGCTCTCAG
Seq C2 exon
GCTGCCAGTAACTCCATGCTCCTGCAGAGGGAGGCGTGTGCGCTGGCGGCTCAGCCCTCCGCTGGGGTCAAGTGGTCTTCAGGAGCCACAGTATCTAGTGAGCAGCTCAGCCGAGAGCTCGATCACGTAGAGCGAGAGATCAGAACTCGGGAGATCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182:ENSDART00000139703:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCAGTCAGCAGACCCG
R:
TCCCGAGTTCTGATCTCTCGC
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]