DreINT0018519 @ danRer10
Intron Retention
Gene
ENSDARG00000101171 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr12:10647544-10650589:-
Coord C1 exon
chr12:10650253-10650589
Coord A exon
chr12:10647632-10650252
Coord C2 exon
chr12:10647544-10647631
Length
2621 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TGTTTTATGTTTTTGTTCAGATG
3' ss Score
9.33
Exon sequences
Seq C1 exon
AGCTATGGCTCTTCCCCGGTCCACCCATCTTTCCACTGTTCCTCCCCCTCCTCCGACCTGCTCCTGTCCTCCCCTTCCTCACGAAGAGACCGAGCTTTCACCTTTGACCCCTGCACTGTGGTTGGAGAACGGGAGGTGCAAGATGAAAAAAGGAGCTACAGACACCTCCTGAATACTTCCCAGGAGACCCTGCCTCTCAGCCCATTAAAATCCCCCTCCAGAGCCTGCGTCCATTCAGAGACATCATCCCCAGCTCATCTTTGCCAGACGGACCGCCTCAAGTCTCGTGAGGGAAGCCAACCTCTACTACACTATGGAGAATACTCACAGAGTGAAG
Seq A exon
GTTTGAACAGCATTTTTAAATATCTTTTTTAAATATCATATAATCTTGCATAAAATTACCTGATAAAATTTGTATACTTACACACTGCAAAAAAGTTTTTGTCTTGTTTCTAGGTAAAATACATTAAAAAATCTTAAATCAAGAAGCATTTTCTAGACTAGCAAAAAACATTGTCTTGTTTTTAGAAATGATGTCAAATTTAAGTGAGATTTCTCTAAAACAAGCAAAATAATCTGCCAATAGTGTTACTAACTAACTAATAACTAACTAACTAACTAACTAACTAATAACTAACTAACTAACAAACTAACTAATAACTAACTAACTAACTAACTAATTAATAACTAACTAACTAACTAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACTAACTAACTAACTAACTAACTAACTAACTAACTACCTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTTTTATTAATTCAACAAATAAAGAACATTTAAAAAAAAGATTTATAAACATTATATAATAAACCCCTGACAACAGCTTAGGTTAAAAAAAAATTTGTCACTTATTACTTAATAATGATAATTAGATTGGAAAGATAAACATGATTTATTTAAATTATTTAAATAAAAACTCTAATTGACCCAGTGCTGCTGACTTTTCTTACAGTTTTTTCCTATATAGCCTGTTCTATCGAGACTGAAAACACATGTGTTTAGCTGTGCCTTTACTGAATGAGCACTGTGCTACGTCCGACAGATCACACTATAATGTTTTTCTCTGCTTTTTCATTCTTTTATAATCTGTTTTAACCTTTTTTTATCTGTTCTTAATCATTTTTATTATTTTTAAATGTTTTTATTTTTCTTATACATGTCCGTTTTGTTCCTGTTTATGCAAAGCACTTGTAAATTGCCACTGTGTATGAAATGTGCTATATAAATGAACTTGCCTTGCCTATAAATAGTGTTTCTCCACTCTACTTCTGGAGGCACACCAACCTTATCTGGCTCGTTATTTCAGGTTTTGGAGTTTCTTCTAATGCTTTAATAAGTTAATTTGGGCGTGTTTGATTGTTTGTTTTTGTGTGTGATAGATAATACATTTGATTGAAAATGTATAGTGTTGGTGTGTCTCCAGGAGCAAGGTTAAGAAACACTGGCTGTAAATGATGTCCTCCTTTTTAAACTATGATCAGGAGAATTTGAGGGTGATCCAATTCAGTTTTACCTGCATAATAATATAGACTCACCAGCCACTTTATTAGGTACACCTGTCCAACTGCTCTATAATGCAAATTTATAAGATGACAATCGCATGGCAGCAACACAATCCATTTAAGCATGTAGACGTGATCAAGACGATCTGCTGCAGTTCAAACCAAGCATCAGAATGTTGAAGAAAGGTGATTTAAGTGACTTTGAACATAGCATGTTTGTTGGTGCCAGATGGGCTGGTCTGAGTTTTCCAGAAACTGCTGATCTACTGGGATTTTCATTCACAACCATCTCTATGGTTTACAGAGAATGGTGCGAAAAAGAGAAAATATCCATTGAGCATCAGTTTTGTGGCACAAATGCCTTGTTAATGCTAGAGATCAAAGGAGAATGGCCAAACTGGTTCAAGCTGATAGAAAGGCAACAGTAACTCAAATAACCACTTGCTGCAACCGAGGTATGCAGGACAGCATCTCTGAATGCACAACACGTCCAACCTTGGGGCGGATAGGCTACAGCGGCAGAAGACCACACCAGATGCCACTCCTGTCAGCTAAGTACAGGAAACTGAGGCTACAATTTGCACAAGCTTACCAAAATTGGACAATAGAAGATTAAAAAAATGTTCACTGGTCTGATAAGTCTCAATTTCTGCTGCGACATTTGGATGATAGGGACAGAATTTGCCGTCAACAACATTTAAGCATGGATCCATCCAGCCTTGTATCAACTGTTCAGACTGGTGGTGGTGGTGTAATGGTGTGGGGGATATTTTCTTGGCACACTTTAGGCCCATTAATACCAACTGAGCAACGTGTCAATGCCACAGCCTACCTGAGTATTGTTGCTGACCATGTCCATCCCTTTATGAACACAGTGTAGTCATCTTCTGATGGCTACTTCGCACCGTGCCATAAAGCGCCAATCATCTCAAACTGTTTTTTTGAACATGACAACGAGTTCATTTAACTGAAAGGGCCTCTACACTCAGATAGAAATCCAATAGAGCACCTTTGAAATCTGGTGAAAAGGGAGATTCACATAATATATGTGCAGCCAACAAATCTGCAGCAACTGCATGATGTTATCATGTTAATTATGGACCAAAATCTCTGAGGAATATTTCCAGTACCTTGTTGAATCTATACCTTGAAGGATTAAGGCAGTTATGAAGGCAAAAGAGGGTCCAACTCAGTATTAGTAAGGTGTACCTAATAAAGTGTAGTGTGTAGAATGGATTAACTGAACCTAGTAAAACATGGGATTTCTATATCTACAGTATATTTTTGATCCATATTAAAAGTTTTGAACAACCATGCTCAGATTATTGTTTGGATTCTCTTTATTGTAAATTTTTGTTTTATGTTTTTGTTCAG
Seq C2 exon
ATGAAAGTCACGATACAGGCCCAGATGATCCAGATAGTCCAACAGTGCTGCTGGACAAAAAAACAAGGAGACGGTTTCTTGATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101171:ENSDART00000164038:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]