HsaINT0144768 @ hg19
Intron Retention
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:27312]
Coordinates
chr17:48193367-48195059:-
Coord C1 exon
chr17:48194771-48195059
Coord A exon
chr17:48193455-48194770
Coord C2 exon
chr17:48193367-48193454
Length
1316 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTCCTTCTCTCCCTGGAAAGATG
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTGACCGATGGCTGCGGGAGCCCCCTGCACCGGCTGCGCTCGCCTTTGCACTCAGGCCCGGGGTCCCCGGCCGGGGGCTCTTTCTGCCTGGATCCTCCGGGGTTGCGGCGCAGCCTGGACGAGGACGAGCCGCCGCCCTCGCCGCTCACACGCTACCGGCCCCTGCACAACGCTGCGTCGCACGAGGGCCTGGCCGCCGCCTCCTGCTCTCCGCCGCGCTCCGCGCCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGCCGCCACCCGCGCGCAGAGCCGCACAGCGAAG
Seq A exon
GTGAGAGGCGGCCAGCGCCGCACCTCCTGCTGGTCGCTCCCGGGCGCAGCAGCCCTCCCGGTCCCGGCGCGCACCGCAGCCGCGGAAGGGGCAGCTGAGCAGGGTGGCTGGGGGAGGTGAAGAGTAAACGCCGCCGCTCACTCATTCTTTACCGAGCGCCTACTAAGTGCCAGATCCTGTGGGCTCTGGGACACCCAGGTGAGCAAACACATGCAGTCTTTATCATCATAGTGGTTTAGTGGAGAAACAATCAAATCAGGCCTGGCTGGCGGCTCACGCCTGTAATCCCAACACCTTGGGAGGCCGAGATGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCGTCTCCAGAAAAAATTAAAAAATTAGCCCCGCGTGGTATGCACCTGTAGAACCAGCTACTTGGAAGGCTGAGGCGGGAGGATAGCTTGAACCCGGGAGTTTTGAGCTGCAGTGAGCTATGATCACTCCTTGCCTCAAAAACAAAACAAAACAAAAACCCAATCAAATCATCCCTTAACTAAATGTCTAGTTATAAACTATAACAAGTGCTATTTGGGAAATGTGTGCGGCAGCATGGCGGGAGAGCATACACCAGGATGCTTGGCCTGGCTAGGAACATCCTGGAAATGACATTTGAGCCAAGTTTGGAAGGTTGGTTAGATGTTGGCCAGGATAGGCCGAGTGCAGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGACAACATGATGAAACCCTGTCTGAACTAAAAACACAAAAAATTAGCCGGGTGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAAGTTGCAGTGAGCCAAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGTTGGCCAGGATAAAATTGAGTAAATGGTAGTGATTCCTACCTTTTTGGAACGTTTTATAGTTTGTAAAAGGCTGTCATAAGCATCCCATTAGGTCCCATGAAGCAGGTAGATGTTATTATCCCCATATTTAAAATGGAGGAAGGCCAGAGAGGTAAAGTGGCTTATCCTAGGACACCCAGCTAGTGAAGGCCACCAGAGCCAGGATGCCTGATTCTAAGTCAAGAGAATTTCTACCACCCCACACTGGCAGCCGAAGGAGGCAGGCAGGGCAGCAAACAGGCAGTTTCCTTCCTTCTCTCCCTGGAAAG
Seq C2 exon
ATGACAGCCGTGACGCCAGTCCTCCTGAGCCCGCCAGCCCCACCATCGGCCTCGATAAGAAGACTCGCCGAAAGTTCCTGGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100-SAMD14:NM_174920:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGATGGCTGCGGGAG
R:
GCGAGTCTTCTTATCGAGGCC
Band lengths:
355-1671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)