MmuINT0138652 @ mm10
Intron Retention
Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:95019930-95021285:+
Coord C1 exon
chr11:95019930-95020218
Coord A exon
chr11:95020219-95021197
Coord C2 exon
chr11:95021198-95021285
Length
979 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCCCCTTCTCTTTCTAAAGATG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTCTACATTCGGGTCCAGGCTCCCCAGCCAGTGGATCTTTCTGCCTGGAGCCCCCGGGCTTGAGGCGCAGTCTGGATGAGGACGAACCGCCGCCCTCGCCACTCGCTCGGTACCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCCGCCACCTCCGGCTCGCCACCACGCTCTGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGTTACCCTCGAGCAGAGCCGCACAGCGAAG
Seq A exon
GTGAGCTCGGTAGGCGCGGCGCTGCCTGCCAACGAGCATCGAGCATCAGAATCGCAGCTAGGCCAGGCAGTTGGGGTAATACAGGGGAGACAGAAGGCTGGCTGGCCATCAGGTTCCCTTCTTCATTTACAGAAGCTTACTATATGCCAGACACCGCTGTGCCCATACAGAGAATAGAGACAGCCCTTGGCCTCTGGGGACGTGTAGCTTAGGAAAGAAACAACCAAATCACCCCATAATTACCGTATAGGTACAAGCTGTAATAAAAGCTATGCAGGAAATATGCACAGTTGTTAAGTGTCCTCACCTGACTGGAAATGCTTCCCTGAGGAGGCAACATTTGAGCCGAGATTGAAAGACTGGTTAGAAAACGGTCAAGATAAAGTCAGTAGTATGCCTAGCAGGCAGGAAACATGACAGAATACCAGATATGGTCATGTACCCTGGTTTTCAGTACTCAGGAGGCGAATACAGGAGAGTCAGAAGTCCAAGGCCACATAGGGAGCTCCAGAGACCCTGTCTCAAAAAAAGAACTAATTAATACTAATACCTTTGGCTGGGTGGTAGTGGTACATATCTTTAATCCCAGCCCTTAGGAGGCAAGAGGCAAGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCTAAGGTAACACAGAGAAACCCTGTCTCAAAACAACAGCAACAAAACCAAAACGGTCCTGCCTTCTCAGATGTAAAGTGCTTTTACAGTTTGTAAAAGGCAAAAGCCTAGGCTCCCATTAGATACTGTAAAATTGGCTCATCTCTGCTTGAAATAAGACACACAGACAGTGTCTTATCCTGGGTCACACAGCTAATGAAGAACCCTAGGGCCAAATGGCCTAATTCTACGTCAAGAAATGTCTACCCGACACAGGCGGCGGCAGGAGGCCAGCAGACCATTGCGTTAGCTGTTTTCCTCCCCTTCTCTTTCTAAAG
Seq C2 exon
ATGACAGCCGGGATGCCAGCCCCCCTGAGCCTGCCAGCCCCACCATCGGCTTGGACAAGAAGACTCGCAGGAAATTCCTGGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181:ENSMUST00000055947:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF153271=Tankyrase_bdg_C=PD(6.5=6.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGACGGCTGCGGTAG
R:
TTCTTGTCCAAGCCGATGGTG
Band lengths:
348-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types