DreINT0019530 @ danRer10
Intron Retention
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27474205-27476972:-
Coord C1 exon
chr5:27476841-27476972
Coord A exon
chr5:27474380-27476840
Coord C2 exon
chr5:27474205-27474379
Length
2461 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CGTCTATGTTTACGGCACAGGTT
3' ss Score
5.65
Exon sequences
Seq C1 exon
AAGGAAATCTGTATTTTCCCTCAATGAGCTGGGTCAGATGAACGGGACGGCAGGAGGCGGAGGGCCTATTGAAGAGGATGAAGAGATGCCTGTTCCACATGAGCTCGGCGAAGAGTTGGCTTACACAGGGAG
Seq A exon
GTGGGTTTCTGAATGCACTGAATAGGTAAAATGCTTTTGGTTCAAGACTTTAAGCTAAATTACATTATTGTCAGGCTCTTACTCCTCATGCTGGTTTATCACATACAGTTAAAGTCAGAATTATTAGCCCTCTGGAATTATTTGCTCCTAGTATATTTTTCCCCAATTTTTGTTTGACAAAAAGAAGATTATTTCAACACTTTGTTAAACATAATAGTTTTATGAACTCGTTTCTAATAACAGATTTCTTTCATCTTTGCCATGATGACAGTACAATATATTTTACAAGATATTTTTCAAGTAGCTAGTATAAAAATGCAATTTAAAGGCTTAACTAGGTTACTTATGTTAGTTAGGCAAGTTAGGGTAATTAGGCAAATCATTGTATAATGATGGCTTGTTCTGTAGACAACCAAAAAAATATTGTAAAGTGTGCTAATAATGTTGACTTTAAAAAATTTTTTTTTAATTAAAAATTTAAAAAGTGCTTTTATCATACCCAAAATTAAAAAAAAAAAAAAACGAAAAAATCTAGAAGAAAAAATAATATAGGATATATTGTGAAAACTTTCTTGGTCTGTTAAACATAATTAGGAAAATATTTAAAAAAAGAAAGAAAAAAACAGTAGGATATTTCTGACTTCAGATGTATATGAATGAATATATGGAAAGAAAAGAGACGTGAGCAAAGACGTTTCTCCATTCGCTACTTGCATTTACAAAACCATTAGATATAAGGCAAATAATACATTTAGCTTTCTTTTTCTTTTCAAACTAATAGATACAAAAAAATAACACTAAATTGCAAAAATCCTCTAGACAATTGGTAATGTCTTAAGTGAATGTAGGGAGAAAAAGAAAACACTCTTTTGTCAGCAGCTCTTATGTCTAATATATCTTTCTCTGCTTGTGTCATTAGCTGAGTTTCCATCGTAACATGAAGTGAATCTTTTCACAAGACCAAAAGCGAATTAGGTGCATTTCCTCCAGGTTGTTAGAGCAGCTGATTGTGGTATTGGTAACCTAGTAACCAACAGAAAGCAAGGCAAGCATAATAGAATCACGTAGGTGTAATGTTCACATCGTCAGAGTTTATTCAGCTAATCTGTTTTTTTCTCCCATTTTTTACATTAATGTGTGTGTTGCCTAGCAACTTTCTGTTGGCAAAACATAACTTAATAATAGGGTAACCATAAGTTTACTTTAGATATGTATGAAAAAAGGCTACATTACAAAAAAGGCTGTATTTGTAGGGTAATGATTAGTGTTGGGGGTAATATTACTTAAGTAACCAGTAAAGTAATGCATTACTTAAAAAAAAAAAAAGGAATAATATTTGAGTTACTTTTGTGAAAATGTAACGCGAGTTACTTTTTAGTTCAATTAATTTGCTTTGAAAAAATAAATTGCTGAATTCAATGAATCACGCAGTCAATGAGAGAATGTTCAGTAATGTGTTCATTATTTTGAACGCATCGAAGAAAAGGAAAAGGGGATTATAATCTCAATGGACAGTGATTTTACTGAAGACAAATAGTACAAAAGTAGAAAACACATTGCTTTAAACTTTCAATAATCTGTACAGCATGTATAGCTCTGGGGTCAGGAAGTTCTCAGATAACATCCTAAAATATCATTTTTATATATATTTTTAATTGTTTTGTTTTAAAGGTAAATAAAAGTTAAAGTTGTACAGTGCATTGTAAATTGCGTTGTTAATCAAGCCTCAGATAGGTAATAAAAAGTCATGCAAAAGTAAGGTAAAGCATTACCATAAAATGTAACTAAAGTTACTTTTTTGGGGAGTACCTCAAAATTGTAATGCATATGACGACAATCTCATTTTAGACAATCTCTAAAATCTCAAGATTTTCCTCTGCAAATTTTAGTATTACATATAAACAAATAATTGAATTCCAATATATTCCATAACTTTTTTGTTATTATTTACCCCACATTAACTCTCCATTATGTTGGCCACTTCAGTTCTCAAAGACTCAAGAATTTAACTGATCTCTAAATGGTATGTGCAGTTCAATTCTGAATGGCTCAAACAACCCTGCAAGCTGCAATATTTATAAATTGATCCTCAGAACCTAATGTTCTTGTACAGCGACCTTTAAGAGTCTTTAAAACCCTTTTGGCTATAAGTTTGAAAGAAGAAAAAAAAATCTCACTTTTAGGTATAGTTTGAGTTTCGGGAGCTCAAAGTGTTCTTGCCTTATCTGTCTTTGCAAATAATTGAAAGATACTCCAGAGCTCTTAGGATCAGGAGAGTTCATATCTAAGCCTAATGCGATTTTTAGCCACTAGTGCCATAGGCTATAACTTGGAGACAGAAATGGGTGCCATTTTTCAATGCTGATAATCAAGATCAAGCTCTCCTCTGTCTATGAAGTACAAGTCAAAGAGGACCTGTCTCTGCTGAATAATGGAGGAAACGTCTATGTTTACGGCACAG
Seq C2 exon
GTTCTGTGGCGGCCTTTTTCTTGACATGAAGCGGAAGCTCCCCTGGTACCCGAGTGACTTTTATGAAGGTTTCCACATTCAGTCTATCTCCGCGGTGCTCTTCATCTACCTGGGCTGCATAACCAATGCAATCACCTTTGGGGGCCTTCTAGGGGATGCCACAGACAATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771:ENSDART00000138140:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=13.3)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]