MmuINT0147205 @ mm10
Intron Retention
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83268194-83271097:+
Coord C1 exon
chr6:83268194-83268382
Coord A exon
chr6:83268383-83270922
Coord C2 exon
chr6:83270923-83271097
Length
2540 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
CTTCTGCCTGTCTCAAGCAGGTT
3' ss Score
7.26
Exon sequences
Seq C1 exon
GAAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGTGGGCGGAGGCGGAGCCTCGGCTGGAGGAGGCGGCAGTGGCGGAGGGGCTGGAGGCAGCGGGGCTGGCGGAGTGGGCAGTGGCGACGAAGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGAGCTGATCTGGACCGGAAG
Seq A exon
GTGCCCGCTCCACACCTGGCAGAGAGCCTGCTGTCCTGAACCCTTCCTTCTTCCGGTCCTGTTAGCGATCCTCTCGCTGCTGTGTGCAGCGCCCCTTAGGGACGGGGATCTGACCACTGCAGTCGTCCCGCACTCTAGTGAATCGTGTGGCTCTGACAGAATTGTGTGGGGTGAGATGAACAGAAGGATCCCACCCGTGAGGAAGGAACCGAAACATTTCTCTAGGCATTCTTTAGTAATTGTATCCTATAGCGGCAGAAACAACGTATCACAAGCAAGGTAGTGTAAAATTACTGACGTCCATTTTCACATGAGTGTGAGATCAGAAGGTTAAAATGGAGATGTCACCAGGGAGCAGAGCCTTTGTGGATCCTACCTCTAATTCCTGGCACTGGAAAGACTGAGGCAGGAGGATTGTTGCAAGTTCCAGGCCAGCCTGTGTTATATAGTGTGAGGCCCTATCTCAACCCTACTCCTTAAATAAAGATGCCAGCAGTGCACCACTGCCTTTGAGCCTCTAGGAACGTCCTTCCTCTCCTTGAAAGACAGCCAGGAGTCTCATAGCACTCCTTGATTTGGCTGTTGTGTCACCTCAGTTTTTGTGTATAAATTTCCATGGCCTTGTCCCTGTGTGATATCTTTGGATAGTATTGCCTGGTTTCTATAATGGCTGGATCAAAGCATTCTTAATGAGTTCATTGTAACTTAATTACATCCTCTCTGCCTCCCTCTCCCGCCCCTTTGTGGTCTCAAGTAACCCAGGTTGACTTCAAGCTTGCTATAGCTAAGGATGATTTTAAATTGATGGTGCCCCCGCCCCTTCCTCTCCAGTGCTGAATTCACAGGCACCACCATGCTTGTCTTATAAACCAGGGCTTCATGCCTACCAGGCAAACATTACCAACTGAGCTTCATTCTCAACCCAGAGACTTTCTAAGTAAAACCATATTCACAAGTATACCAGAGGTTGGAGATTTAATGTATCTTTTAAAAAGAAGCAAGATCTTGAAATCTTAATTTTTTTTTTAAAGCTTCATTTTTCTTTCTTCTGGGGAACAAGAAAAAACTTTCCTGGCCTGAGTTCCCTGGCTGCTCTTGGAGTCACCTAGGTTGACCTAGGTTTAGGGAAGTCCAGAGAAGTACAAGGCTCTGTGCAACCGAAGCCGTTGGGAATGAAGCTGTGTGCTGAGTCTTTCTCGCTGTGATAAGATTCTCTGACAAAAGCAACTGAAGGGAGAAAGGTTCGAAGTTTAAGTAACAGCAGCTCATGCTGGGAAAGTCAAAGTGCAGGAGTTGGAGGGAACTGGTTACATTGTATCCACAGATACATTGTATCAAGACACGAGAGCATTAAGCTCTGGCTCATTTTTTTCCCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGAGGCAGGGTTTCTCTGTGTAGCCCTCCTGTCCTGGAACTCACTCTGTAGACCAGACTGCCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGATCAAAGATGTGTGCCACCACTGCCTTCTTTTTCCAATTTTTATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCGAAAGTCCCCTATACCCTCCCCTCCCTCCTCTACCCACCCACTCCCACTTCTTGGCCCTGGCGGTCCCCTGTACTGAGGCATATAAAGATTGCAAGACCAAGGGGGCCTCTCTTCCCAATGATGGCGGACTAAGCCATCTTCTACATATGCATCTAGAGACACAAGTTCTGGGGGTATTGGTTAGTTCATATTGTTATTCCACCTATAGGGTTGCAGATCCCTTCAGCTCCTTGGGTACTTTCACTAGCTCCTCCATTGGGGGCCATGTGTTCCATCCTATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACTGGCATAGCCTCACAAGTAACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATATGCAATAGTGGCACTGGCTCATTCTTAAGCACTGGCTCGTTCTCATCTCATTGTTTCCATTTTATTCAGTCCAAGATCCCCTGCCCAGGGAGCAGCCTTACCCTCGGTCAAGATGGGTCTTCCCAATCAATCCACAAAGTCAAGATAATCCCCAACAGACATACACAGAGACCCATCTCCCAAATGACTGTAGATCCTGTGAAGTTGACAGTTCCCACTAACCATTTCATGTTACATGGCTTGGGTTGGGTAAGGACAGGAGGAAGACCCCCTCATAGTGGAGTATTCCCATCAGAACTTTCTTCTCTCAAACAGTTTGTGTCCACCTTCCCCAGTATGGATGGTGATGACTGCAAATTTCTAGGCCTACAAGAATCATGTTTGGCTCTCAGTGTTCTGGTAGAAAGAGTGTGACTCCATCTATCCCTGATCCCTACTCCAGACTCTTGAGGGCCCTGGAGGCATCCCCATCCCTCCTGGTGTCTGTGGAGGAAAGATGTCTTCTGCCTGTCTCAAGCAG
Seq C2 exon
GTTCTTTGGAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATGGCTTCCACCTCCAGTCCATCTCTGCTGTTCTGTTCATCTACCTCGGCTGTATTACCAACGCGATCACCTTTGGTGGGCTTCTGGGGGATGCCACAGACAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323:ENSMUST00000113899:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=9.4)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types