DreINT0020507 @ danRer10
Intron Retention
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24082861-24085872:+
Coord C1 exon
chr7:24082861-24082954
Coord A exon
chr7:24082955-24085643
Coord C2 exon
chr7:24085644-24085872
Length
2689 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TATGAATTATTGTGTTTCAGAAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
CGGTGTGTTCCATGCCTTGTTTGAATGGGGGCAGGTGTATCCGACCCAACCGGTGTCACTGCAGTCCAGGATGGGGAGGGTATGACTGCTCTAG
Seq A exon
GTAAGTTGTACACAAATAAGTTATTTATATCCTTTGTATGAAAATATTCTTCAGCATTTGTAATGAAGGGTAGCTAGTTGGAGCTGTTTGAGTAAACCCCACTCTCCTGTCCTCAAGAGGCGCACATGCAACTTAGGGCGTACTCACACTATGTATAGTTGCCTTGAACTTTGCCAAAGCACGCTTGCCCCCCCTTCCGTCTCCCCCCGACGGCCTGCACTCACATTGCATTTGAGCCTGGGCACGCTTACATCATCGATGATGTGCTGTTAAGTAAGTGCTTTCGCTTAGCACAGTGGAGATTTCGTCCTTATTAGTATGCATGCCTCCTATCTCAGAACCATTGAATAACACTGGCTTGATGGGTAGAACTGGAAGGGTTGTGATGGTGCCGTGACCCTGATCTGAGTGAGGTTTAGAGCTACAGCTTTTACAGCTTGTCTTTAGTGTTCTTGTTAGCAAGGCTTCCTCCCTTCCCAAGGTTATATTGGTGCCATGACCCAGATTGGAGTGGGTGTAAAACAAACAAACTAGGCTGCATTCTACTAAATACTTTATGCTCTGTTCTTTCCAGCATCTTTCTAACACATTGACTTGGACGTACGTAATTGATTACGCTGTGCAAGCAGGTCCGGCGTGTCCATAGAGGCGACCTAAATAGCAAAATAGAGAGCAAAATAATGGCGGCGTCCGCCACCCCCTCCCCCATCCTCACTTTTATCCGTGACAACCCCGCACAAACACCCCCAACACTAGTTTGCTAACGTTTTGTTTTTAAAAAATTCTAAAAAAAATTCAATTTCCCGCTAACATTTGAGCGCTGTCAAGCGCGTTCATAAACACAGCTGATTTGCCATAGTGTTCACCAGTTCTCAACAGAAATGACTGTGATTGGCTGTGAAGGTCATCAGTTTTTTGCACTTCACCGATGTTTACCACACTGTGAAAAAGGCAGGGTTTCACACAATTCATTCAAGTTGTCCCAACAAAAATCCTTTACTTAACACTTTTAGCAAATTTTTGTGGATTGAACATAAAATAGTTAAGTTGTCCCAATGAAATATCAAGAATTGTGATGATTCAGCTTATTTTAAATTAGTAGTTTGAACTCACAAAAGAAAAATATTTTTTTGAGTGTAGTGCAAACACAGACGAGCAATCCACTGATGACTCGACTGTGCATTACTGCTTTAAACCGATCCAGTGTCTGTGATTGCACTCATTGAAGAGCGGTGAACTGATGACCTTCACGGCCAACCACAGTCATTTCTGTTGAGCACTGGTGAACACAATGGCAAATCAGCTGTGTTTAAGATCGTGCTTAAATGTTAGCAGGAAATGGACGTTTTTAAAATTTCAGTACTGGGACAACACTATTACAGACAATATGAGGGTGTGCAACAGAGGACTGCATTGTTTTATTGCTCACCGGATTACATAGGCTGAAGCAGAGAAGCGTCCTCATGGTGTTTACCTGGTGCCATGAACTGAAGCCTAGAAGGACACTTATTATAGTATCACTCTTAAAGAGATTGTGATGTTGTTTGATGCCTAATATACTTTTAAGTGTTTAAATTAATCTTAACTGAATGATATTAAAGTGATGTTTACACCATGTCTGCATTTTGAAATTGCGACAACAGCTGGAGGTTTGTAGTCTACGCAGCATGTTGTTGCAATGATTACAGTGCTGATTATATGCTTCCGGGATTCTTCCCACTGCAGCCTCGCTTCCGTTTTTTAAAATAGAGGCCGTGTGAAATAAGCATTTGGGAAGCAGCCTTACGATTGAAGGATTTGGGCTCTGTCTCTTTACACTTTATTTGTCTACTTCACAAAGTGGAACACACATCAAAATGTGTACATAAAGTACATAAACCCAAGACAGTATTTCCTGTACTAGAAAATCTGATAAACCTAGAAGGAAGTTTACCAAGAATCACTAAGAATTCCCCATGATTATGAAAGCTGAGATTAATTGGATACATATGAGGAAGTACTCTGACACATCTACTTTCAGAATGCTGTGTCTCTTAAGTAAACACATTTCCTTAGGCACTGCAGTTGGTTTCAGTCCACATATTGAGTTGGCAGAGGGTTGCCGTCATTCCTTTCAGTTTCATCCTTCTAAGTAATTTGCTCTCTATTTCGCTGATTCGGTGCCAATGTCAGCCTCAAACACAGCCTCTCTCTTGAGTGCTATTGATCTGACCATTTTTTTTTCTATCAGTGTTTTTAACCAATCAGCTTGATTCCAACAACCCTCAGCTAATTAGATGCTGCTGTAGTCTTTTCCGGTCAGTGTTATTTAGTTTTTTAATATCCATCTATCTGATCTGAACAAGGTGGCACGGTGGCTCAGTGGTTAGCGCTGTCACCTCACAGCACTAGTGTTAAAAGTGCATAAATGTGAGAGTGTGTGGGTGTTTCCTAGTACTGATAGGGCATCCGCTGTGTAAAGCATATGCTGGAATAGTTGGCGGTTCAGTCGGCTGTGGCGAGCCATAGTAAATAAAGGACTAAGCCAAAGGAAAATGAATGAACTGAACATGTGAAATACAGTAATTATAACTGATTATAAGTCTGTTATAAATGTTTGATGGCTTTAGAGATTATGGTGGTCATTTTTGAGTGATGGTGGTTTCTACAATTTGACACTGATTTTCGATTATGAATTATTGTGTTTCAG
Seq C2 exon
AAAAAGAAAATCTGCATACTTTCATTTTTAACGTGCCACTCTACAAGGGTTTTGGAACAAGATGGTTTCATGTCAGATTATTGTACACAACACGTTGTTTTCTTTCCCTCAGAAAGTCCTAAGTGTTTTTGTAAATTAAAGCTGTATTTTTTCATGTAGAAAAAGAAACAGTATTAAATATATGCTGCTGCTATATACATGAACTTGTACGATGTGTAAAAATGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526:ENSDART00000076882:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]