RnoINT0146354 @ rn6
Intron Retention
Gene
ENSRNOG00000033110 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:RGD Symbol;Acc:1588987]
Coordinates
chr5:75143867-75144770:-
Coord C1 exon
chr5:75144745-75144770
Coord A exon
chr5:75143889-75144744
Coord C2 exon
chr5:75143867-75143888
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTTGTTTTCTTTCTTCAGGAA
3' ss Score
12.02
Exon sequences
Seq C1 exon
CCTTGGACAGACTACGATTGCTCCAG
Seq A exon
GTAAGACAGCCTATTACAAAAGACTGGCCGAACTCTTGGACCATTTTCGGAGTGCGAGGATGGAGATGCCAAGAGGCAGAAGGTATCTCTAGTTGAGCCGTAAACTTCGTTAATCACAGGCTAACTAGATAGGTCTCTTCTAAACCTTCGCTAAAACCCAGGCTAGAAAAGGTCAAAGCGAGGATTGGATGAAGAAGACAAGATCTCAAAAATAAACAGTACGAGCGGCCTTCATCGAGCACATATCCTAAAACTAGAAAAATAAGCGGGCGAACACACGTGCACACCACACACACATTGAGAAGATATACTAGAAGTCAGTAAAGATTTACACAAATGATAAAAGTAATATTCTGAACAGAAAGTACAAAATAAACGAGTATATTTTGAAACGTGCTAGAGCCCATTATGACAGGCAGCCGTTTAACCCAGCATGCAGAGGTAAGGAGCAGAGTCTCTGTGAGGTTCTAGGGCCAGTATAGCGGGTAGAATAAAACTCTGTCTTATAGGAAAAACAAAGGAAAGAAAGGAAGGGGGAGGAAGGAAGGAAGAAGAAGGAAGGGAGGAGGGAGGAGGGAGGAGGAAAGAGAAAGTATCCAGCCAATGTTTGAAGGATATAATTACAATAAAACTATTGGAGTTGAAAAAATGTTTAGTGATATTTAATGTGTCCAAGCATCTTCCTTCTCCCCAGAAAATGACCGTCTTCCTAGAACATATTGTTGCAGATGTGTATACTGGACTAAGATTATTGTCCCCTTTTCCCACGAGCACCCCCAAAGTTTCCCCCACCTCTGTTCATCTTTCCTCTTGAACCTATAATTTCCTTACGTTTTCTTTTGTTTTCTTTCTTCAG
Seq C2 exon
GAAAAGGAGAAGCGGGCTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033110:ENSRNOT00000047200:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]