GgaINT0062214 @ galGal4
Intron Retention
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66365631-66370221:-
Coord C1 exon
chrZ:66370128-66370221
Coord A exon
chrZ:66368212-66370127
Coord C2 exon
chrZ:66365631-66368211
Length
1916 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGGTTTTTTTTTTGACACAGAAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
CTGTTTGCCAGTCACCTTGCTTAAATGGTGGGAAGTGCATACGACCAAATCGATGTTACTGTCCCTCATCATGGACTGGACATGATTGCTCAAG
Seq A exon
GTAAGTGTTGCTGAGTGGTGTCCCATGACTAACCCAAGTGGCTCACTGCTGAACAGCACCCCTGAAGAACTGGGATTGATTTTGCAGAAGAGCATCTCTAGATCCTGTAAATCAATAGTCACCAGGCAACTCATAATTTATGGACAATCTAGAAAGACCTCAGAGAGTACTCTGTCAGATGGTTACCAAATGTATAGAAATCCCAGGAAGTGGTACATCTGTGCATGAGCAGATAGGCAAGCCTGCAAGGTTTCACCTTAGTGCTAATGCTGTAAGTGGAGGTGTTTGTTGTGGCACAATACAGAACATTTTCTAGGTGTTCATTTTGAACAGTGTATACTTCAGCTGGGTCCAGGTTCAAGATGCAGGTAATGCAACAGAAGCTGTAAATAGTAGTTCTTTTTACAACTAGCATTGGGTAATGTCATTATTTAGAGTGAAATACGGTGCCTCTTAGTCAGGTCACAGTTCACATTGCCTGACAGTAGTATCACCATGAGAGGCAGCATTTAGAAGTCTTAATGTTTGTTTTTTAAAGCTAAGTTGGGCAGTTCTGCTTATGTGGAAGTCTGAGCAGGAGCCAGTTTATCTGTGGAAAGCTGCCTTTTTTCATACTGCTGCTGAGAGCCATTTACAGCCCTGAGTATGGAAAGCAGGCAGAATTGTGATAATGTTGTGGTCCGAAATCAGGTATAATAATGAAACGGGCAGCATGAGTTATCCTGCTCCCTGTATGGAATACTAATGAGGGCCATGAAACAGATAGCAGCAAAAACACTTGTACCTCCACTCCTCAGCAGCCATGACAACCTTTGAAGATGTCTGATTGCTACTGACAGACTTATTCTGAATGCATTGGTCATTCTCCCGGTGAGCTAAACAAATACCAGCTGAACCAGATTTTCCTTCTTTTCTCTGGAATATGGACAAACCCAATGCCACTGTCTTACTTTTTTATTCTTCTTTATGGATGGATATAGATGGGGATTCCTGTCTGTCTCTCTGATACACCATTCATCTTAAAGTTCCAGAGAAGATGCCTGTAGCAAAACCATGTTGTCTTAAATGAATAGTTTTCATTTGTAGTTATGTTTACCTAAGTGAAGCAGCCTATATGTACTGCTAAAAAAATAGTGTCTTTATATAAAAATAGTGATGTTAATCTGAAAGTTAAACATAAAGTCTGGTAATATTTTCATTTAGGATATAAAGCAGAGAAGCCCAAGTCCACTGGATTTGTCAGCCAAATAAACCTGGAATTTATCTCTGAGGCAAAGCAGATTTTCAGGCTTTTAGCAAAGTGGACTCTTGCTGGTTTTTGTGTTTGTTTTTTAACTTATCCACAGCTCTGTGCAGCATTGCTGACCGTGAGAGAAGGTGGAACGTTGGTCCTGTGGGATAGTGGTCCAGCAACACTTCCCATCAAGGACTGTGTGAGAGGAATCTTCCCTACACAGAGCTGAGGGGGCTGAGCGGAGATGACAGAAGCAGGCAGTGAGATCTCTTTTGAGAACCACCCCGATGGCTCTTTACAGTGCATTACAGTGCTGAGGATTCAAAAACAGTACAGGCAAGACAGGAGTAAGTGTCTTGATAGCAAAGATTTGCTGTTGCAGGTTAGGTAGGCATGATTTATAAGGGGAAGTTGGAAGGGCTAAAAGCTTTTATCAGCATCCAGGTCTAGATTGGCCCCAAAGCGTGTGATGAGTCATATTTTGCATTAGACGTCAGCTCACTCACTCTTTTCCCCTCTCAGTGTGCTGTCTTGAGCTTGGTGCTCTAACCCCAGTACAGGCTCAGCCTCCTTCTCCACGTTCCTCACTGTTGATCTTGCTCTCCATTTTCACCCCTGCACTGATTCTATTTTGTTTCTTACATGTGGTGGTGTTGTTTGTGTGGTTTTTTTTTTGACACAG
Seq C2 exon
AAAACGGAAGGCTGGATTCTACCACTTCTAACAGCAGAGCAACAGTTTTACACTCAGAAACCTTTCTTCAGCCTAGACAGCGGGGCTCAGAATCTAATGCATTGTAAATCACATCCATTGCTTCCCTTCCCCCCACCTCCTTTGTTTTGTATTTTATTTTGTGATATATTTTTTCTATACCTTTCAATTTTTAAAGAAAACCTCTGTATTTTCCATTTACAAAAGTATTATCAAATATATGCTGCTATATACACACCATACACATACAAAAGTGAAGATCCCTACTGTTCACTGAGAAAGTGGCTGTGTACGGTGAAGTCCCTCCCATTTCTTACACCCGGTAAGCTAATTAAAACATGCTATACTGCCAGCCATGATTAAACAGAATGTTGCAGTTCTGCTTATCATCTGCCAAAGCATACTGAAATCCAGCAACTTAATGGTAAGGAATAATTATGTAAAGCTAATTGAACCACCGAACTTTGCATTGGGCTTGTGTCATGGTTGTATAAATTAGAAGTACATCTGATAAAGTCCCAATTGTAGCCAGAGTTCCTGGTGGACGTAAGTAGATTCTGTAATGTTCATTATGTGACATTAACGTCATTGGAAAGCGACTTAGATGGAAGGCAGTGGCAAGAATTTTAGCCATCAGTAAAATACTCAAAAGCATGAAAGAGTTGAGACAATGTCTAGGCAATAACAGCCTCTGAGGATTTTTGGCATACAGGCATTTCAGGTGTCATGATCAGTCTGGATAATCCAGAATGCAGCAGCGGACAGCACAGACCACTGAAAACTTCCCCCTGGTAATGGAACTCACCACTACTTGCCTGCAACCAGTAGCCCTTTCCTGTGTGATGATCAAATACACATCCAACATCCTCCTGCCAGGCAAATGTTTTTGAGACATGGGGTTTGGGTCCCAATGTTTGGCCCTGCAGTAGGGAGAGAAGGTGAAGCTTTGCTGTTTGCTTGCAGAAGAGTGGTATTTATGTTATGCTGAACCCTCAGAGAACTGGAAAAGGCCTCTCTTGTGTACATGCACAGGCAGAAATACCTAGCTGAGTAAGAAATGCTGAGAGCACACATGCTGTCCGATTTCTCTTTCGCACATTGTTGATCCCAGTGCATCTGAGAGTCACACATGGTTGAGTGCCATCATTCAGTTGTGCTCTAATGAGCTGAGATGCTGAGATTTACCGATGGGTACGTGGTGTGGCGGAATTACAAGGTGGAAATCCCAGTCATGTGCTGAGGTCAAATGTTTGCTAATTATCATCAGATAGTAATGAAGTCTAGTCTGTGAAAGAAGATTTTAGAGTGAGAACCATTGATCGGGAGCTCCATTTTTCCCAGTAGCAGCAGAAAAGCATGACTGTCAGCCCACACTAGGAAAGAAGAAGGAATATGCTCTACACTCTGCAGCATTACTGCGTAGTTACCCTCGGGGTCATGAGCGTGCACACGCTGCCCCCACCTCCCCCCTTCCCTCTTTATAAATATACATTCCCTTTATGAATGCATGATAGGACAATAAAAGGAGCTAATGGAGGGACTAGGGCGCTAGTGAAGACTGACACATAGCTAATGGCTGTTAACCCAAGACCAGAAATGGGGAACAAACAAGTGAAGCTGTGAACCAGGAAAAGCTGGAAGAAAAACAAACAGGTGAAGAATATTTGTCAAGGGACGAGCTGAATTCGAATGCAGATTCCTTCCCACTGGGAGCTGCAACCGGCTGAAGAGTTGTTCTTTCAACTCCCGTAAATATATTTTTTCTGATGGATTCTGCTGACATGTACCAACAGCCATCAGTGTTTACAGCTTTGGTTCAAGTTAGCATTCAGTAAATAATAACACGTTTCAACCCACGGTCACTGCCATGTGTAGGCACTTTGTTCCCTGACTCCTGCTGCTGTGCACAGTGGGGTGTACAGATGCTGTAGTGAGCAGCTCGGGATACCTGAAGGGAAAGAGTGCATCAGTGGGAGAAGTGGATTTTTATTTATATGTCATTCTCATCTTTTACAAAGTAGTCCCATTTTCAGTGTGCTTCTCTGGTACGTGCCCTCACAGCCCTGGCAATCTCCAGAGCAGAGCAGCAGTGCTTTGGAAGGCGAGCAGGGCTGGCAGGAGACTGCTGAGCCTTGGGGGCGAGGGCCGGCTTTTAGCACTGCAGCTTCACACTAGTGACTAGTACATGGAGTTTGGGGATATACTCAGTCAATACGTTTCATAAGCTGATGTGGTAGAAAGAGTAGCTGAAACTATAGGCTGTTATATTAGTGCTGTGTATGATGCTTTGATACTTGCTGGAATATTATCCCTTCCCCATTCTGTGCGGTATTGTCATTTATGTCACTGCTTGTTGTGTGTTTTAAAGGACTTCTGTGTGATGCACTTTACACTGTAAATAAAGTTGCACCCTGTTTAGTACCTATATAGATGCAAGACTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTCCTGTTTTGTTTTTTGTAACGCTGAGCAACAGAAGTGCCTGCCTGCCCCTTGGGGTCCGCTGCTGGAGCATGCGTGTGGGGAGGATGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721:ENSGALT00000025350:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=87.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCATCATGGACTGGACA
R:
GACTTCACCGTACACAGCCAC
Band lengths:
353-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]