DreINT0021356 @ danRer10
Intron Retention
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21698052-21698501:-
Coord C1 exon
chr24:21698365-21698501
Coord A exon
chr24:21698211-21698364
Coord C2 exon
chr24:21698052-21698210
Length
154 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TAACCCATTTGTGTTTGCAGGGG
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATAAGGTACTACCCACAGTTTTGCAAAAGGCGGAAGTTAACGTTTTAAGTCAGAGTGAATGCAAGAGAAGTTACGGCCCTGTGTCGCCCCGCATGCTGTGCGCTGGTGTGCCCTCAGGAGAACAGGATGCCTGCCGG
Seq A exon
GTGAGGGGAGATAATGGGCACTGGACTGGCTCCTGCTTTATGAACCAAACATAAGCTTAGGATCTCATTTCAGACCATTATTAAAAGTCTAACCTTCCTCATTGTTCAAAGTAAGCCGACTCTGGAATTTCACATAACCCATTTGTGTTTGCAG
Seq C2 exon
GGGGACTCGGGCGGTCCTCTGTCTTGTCAAGCACAGACAGGCAGCCGCTGGTTTCTGACTGGCATTGTGAGTTGGGGTTCTGGCTGTGGCAGGCCATACCTTCCCGGAGTTTACACCAGAGTAGCCAAGTTCATAGACTGGATACAGAGACATATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161:ENSDART00000129558:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACAGTTTTGCAAAAGGC
R:
TGGTGTAAACTCCGGGAAGGT
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]