MmuINT0162776 @ mm10
Intron Retention
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45656315-45658179:-
Coord C1 exon
chr16:45658043-45658179
Coord A exon
chr16:45656579-45658042
Coord C2 exon
chr16:45656315-45656578
Length
1464 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TACATTGTCTTTTTGCATAGGGA
3' ss Score
7.76
Exon sequences
Seq C1 exon
ATAGTAAGGGCTCCCCGGTTTTGCAGCAAGCGGAGGTAGAGCTCATAGATCAAACCGTCTGTGTTTCCACCTATGGGATCATCACGTCGCGCATGCTCTGTGCAGGGGTTATGTCTGGCAAGAGCGACGCCTGCAAA
Seq A exon
GTAAGTCTTCCCCTCACTTAACATGTTGTGCTCCATGATTTCGATGCTCTCACATTTCATCTACACAATACTGGGGCTATCTAGGGCAGGCCTTGCCCTTCCTTTATCTGAGTTGCCCAGATACTAATTATCATTCAGTTGCCTAAGACTAGGGAAGTGTTGAGAATGGACAGGTTTAAAAAAAAACAACCATCCATAAGTAGACACATACAGAGTCCTTCTGTGTTGTTCCTTGTTCCCTTAGCACCAAAACCACCGGGTTCGTTTACTTGTTACTTGGATGCACAGTTGGAAAAGGGGAAGAGGAAGGAGGCAGACACAGAGCACACTCATGTAGGCCTCACAGTTGCCGTGGGAGCAGTAGGCGTTCTTAGTTCTTTGGGACATTACTCTGGTCTCTCCATACCAATCCATGCAGATCCCTCCACAAAATACAAAGAACAAACAGGTGACTCAGAAAATAAGGAGCAGTAGGGACCTTTCCAACATCTTGCCAATCTTAGCTGCAATGTGGGCACCTTATCTTATTATAATGATTTCTTCTATCTTTTGAGACCTTATTGGTAACAAGTACCTGGCAAAATGGAATGACTAAATTCATTCACATCATCATTTATTCTCATTCTATAGGAGAGGGTAGTAGAGCCTCCTCCCAAGTCCCCACAGTTACACAGTCAGTAGGTATGATGGTAGAAATGGGAGCCCTTTCCTTTCTTATACTAGTGCTAGCATCGTTTAGGTAGTTACTACAGGTGGCCAACTACCTACCTGGCTGTGTTCTACATAAGCACCAAGGTTTGGGCATTAAATTAGACTTGTAGAGCCAGTCTGGAAATGATAAAGAAGGCCCAGTGTGTCAGAATATACCTAACGAGCTGTGGGATTACTGAACCGAGACACGGGGGCTTGTCTGTAGCACTTTCTTACCTTCACCTCTGACCTACAACTTTATTTTAAGATGCATGCTGTAGGGATTGTTTACAACTAAATTATTTCAGTTTTTGTTCTCTGGGGCTGAGATGTCCCGAGGAAATTCTCACATGATAACTGTTGGTAGCCAGTGGCTCGTAGGGGTGCTTCCATGGACCTGGCTGACTCTTTTCTTCTTTGTCCTTGGGCCAATGAGCCAACTGCTTAAGAGGCATGGTCCACAGATGGAAATTAATCTTCAAAGATAACTGTGATGTTGTTTTAACGATAAAATGACCCTGGGCAGTGCAGGGCATATAGTTAACACTCATTAGGCATCAGTCCTACTACGACTACTCCTTTCACAGATGCAATGAATACTAGTAGTAAATTCTTGGGGGATTTGTAGGAGAAATTGCTTTCTCCTACATAGTGATTATACGAGCAAAACCATGTCAGAAGGTGACATTTGAACATAATCCACTAGACACATAAATGATGGCCTGGGTGCTCATGAGACAGATGTCTTCATGCTTACATTGTCTTTTTGCATAG
Seq C2 exon
GGAGATTCAGGAGGACCTTTGTCTTGTCGAAGAAAGAGTGATGGAAAATGGATTCTGACTGGCATTGTTAGCTGGGGACATGGATGTGGAAGACCCAATTTTCCTGGTGTCTACACAAGGGTGTCAAGCTTTGTTCCCTGGATTCATAAGTATGTCCCTTCTCTTTTGTAACTGTAACAGATGGATTGTTAACTGTGACTTATATGAGGATAGATCCTTGAAAAAGAATGTAAGTATTATCAATAAAATTAATCATTTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177:ENSMUST00000114562:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGGTTTTGCAGCAAG
R:
GGATCTATCCTCATATAAGTCACAGT
Band lengths:
344-1808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types