RnoINT0153446 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60136210-60138027:+
Coord C1 exon
chr11:60136210-60136346
Coord A exon
chr11:60136347-60137794
Coord C2 exon
chr11:60137795-60138027
Length
1448 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GACATTTTCTTTATGCATAGGGA
3' ss Score
6.79
Exon sequences
Seq C1 exon
ACAGTAAAGGCTCCCCCATTTTGCAGCAAGCGGAGGTAGAGCTCATAGATCAAACCGTCTGTGTTTCCACCTACGGGATCATCACCTCTCGGATGCTCTGTGCAGGGGTTATGTCTGGCAAGAGCGATGCCTGCAAA
Seq A exon
GTAAGTCTTCCTCTCTTTCCTCACCTAATATGCTGTGCTCTACGATGTGATGCTCTCCCATTTCATTTACACAATACCGGGGCTTATCTAGGGCGGGGCTTGCCTTTCCTTTATCTGAGTTGCCCAGATAATAATTATGATTCAGTTGCCTAAGACTAAGGAAATGTTGAGAATGAATAGGTTTAAAAAACCAACCTTCCACAGGAAGACACATACAGAGTGCTTCTGTGTTGCTCCTATTCCCTTAGCACCAAAACCACTGGGTTCCTTTACTTGTTACTCTGATGCATAGTTGGGGAAAGGGAAAACAAAGGAGGCAGACATGAGGCACATTCACGTAAGCCTCACAGTTGCCCTGGGAGCAGTAGGCATAGGTTCTTAGTCCTTTGGGGGCATTACTTTGGTCCCTTCATACAAATCTGTGCAGATTGCTCCACAATCTACAAAGAGCAAATAGGTGATTCAGAAAACAAGGAGCAGTGAGGATCCTCCCAACATTGGCCAACCTTCGCTGCAATGCTGGCACCTTGTCTTAGAATGATGACGTCCATCTTTTGAGAACTTACTGGTAGCAAGTACTGGACGAGATGAAATGAATAGATTCATTCACATCATCATTTATCCCCATTCTATAGAAGAGAGTAAATAGAGCCTCCAAAGTTACCCAGACAAGAGCTATGACAGGTGGGATGGGAACCCTTTCCTTTCTTCTATTAACGCTACAGTTTAGGTGCTTATTGTAGGTGTGCAACTACCTAGCTGTGTTCTACACAAACACCAAGGCTTGGGCTTTAATAGACTTATAGAGCCAGTCTGGAAATGATAATGAAGACCCAGTTTTCCTATTGTCAGAATGTACCTAACAAGTTGTGGGATTACTGAGCTGAGACACAGGGGCTCGTCTGAAGCACTTTGTCAGCTTCACCTTTGACCTATAACTTTAACCACCCTCCAAAAGATGAACACAAACCCCAGCTATTATACAGGAAGATTCATGCTGTAGGAATTGCAGCTCTTGCTCTGTAGAGCCAAGATATAAGGGAATTCTCAAGTGATAACTCAGTGACTCGTAAGGCTGCTTCCATGGACCTGGCTGACTCTTTTCTTCTTTGTCCTTGGGTCAATGAGCCAACTTCCAAGATAACTGTCATGTCGTTTTGATGATGAAATGACCCTGAGCAAGGCAGGGCATATAGCGAACACTCACTAGACATCGGTCCTTCTCTTCCTACTACTTCCGCCACTGCAGTGAATGTAGTAGTTAATCCTTGGGGGATTTGTGAGAATTGCTTTCTCCTGCATAGATTATACAAGCATGAATTATACAGATTATACAAGCAGCACCATGTCAGAAGGAGATGTTTGAGCATAATCTATTAGACACATAGATGATGGCCTGGGTGCTCATGAGACGGATGTCTTTATGCTGACATTTTCTTTATGCATAG
Seq C2 exon
GGAGATTCAGGTGGACCTTTGTCTTGTCGAAGAAAGAGTGATGGGAAATGGATTCTGACCGGCATTGTTAGCTGGGGATATGGATGTGGAAGACCAAATTTTCCTGGTGTTTACACACGGGTGTCAAACTTTGTCCCCTGGATTCATAAGTATGTCCCTTCTCTTTTGTAACTGTACAAGATGAATTTTTAACTGTGACTTTGATATGGGACTGTGCTAGATCCTTGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCATTTTGCAGCAAGC
R:
ACAAGGATCTAGCACAGTCCCA
Band lengths:
355-1803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]