GgaINT0119262 @ galGal4
Intron Retention
Gene
ENSGALG00000015389 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:88008902-88010363:+
Coord C1 exon
chr1:88008902-88009038
Coord A exon
chr1:88009039-88010127
Coord C2 exon
chr1:88010128-88010363
Length
1089 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATTCATTGTATTTTTTTCAGGGT
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATGACGAAGGTGCTGCAATTCTTCAGAAAGCAGAGGTAGAAATTATTGACCAAACATTGTGTCATTCCACGTATGGAATTATCACAGCTAGAATGTTTTGTGCAGGATTAATGTCTGGAAGAAGAGATGGGTGCAAA
Seq A exon
GTATGTACTTCAATATACCTCACGCATTTTATTTTGTCTTTCGTTGTTGCATGATGAGACATAAGAACTGACTGGCAAGTTGCCTTGTTTTTCTGAAACACAGCTATGTAAAAGAGCTATCAACCAGTCTGCAATTTGGGTATTCTCAGAGATTTGCTGCTCTATGGGCATGAATAGGATCGTGACGTTTCAGTTGCAAGCCTAGGTCCAGAGAATTTGCACACAGTAGTGTGGTGAAGGTAGGCTATTTCTGGCAAGAGGGTCTCTCAGTTGAAGAAGAAACTGAGAACCTATCTTGACTTTTTTTGGAGACCCTTTCCTCTGGTGTATGACCACAGGGCTTTCAGATGAGATGCAGACATCTAGGCATAAACTTTCAAATGCATAATATTTCTGGCAATGCTGTAAAACGCATAAAGTTGATTCAAGAGACTCTTCCCAAACCGTGGTGTATTTTTTGCTTGAGCTACTGTCCATATTTTTAGGCATTGTGTACCTCTAAATATTATCTACTCACTTACATCTACTATAGGACAAAAGGTAGTTGTGGGGGTGTTTTTTGTTGTTTTTTTGTGGGCGTTTTTTGTGAAGAAAAAAATAAGTATTGATATATTCATTCTGTTTCATTTGCTTTTAATTTGAAAGAAGTTATATTGAACACAATAACCACACTTTTATTTAAAAAGCAAAAGGCTTGACATTTAGTGCCCTGAGGTGTGTAACCTCTAAATGAACATACATATTCAGCAGCAGATTTGGGGTTTAGCTCTAAGTTTGAGACTGGGAAGTTAATTGTGAATTTGAAAAATAGATAATAAAAAGTGGTATCCTTATACCTTTAAAGAGTGCCAGCTAGCTCTCTCCTGTGAAAGAGTGAACTTTGGTAGAACTGTGCAATCCCATCTGCTTCAAGAAGAGAAAAACAAAGCATGAAGTTACTGACCTAAATTCTAGCATAAAATTAGAAGTATACAAGTGGAAAAATATAATACTGTTGAAATTATTCAGGAAAAATATCTGCTGTTGAACTTTGTCCCAGTTTTAGTTTTCCAGATTTTAAATGCATACAATTCATTGTATTTTTTTCAG
Seq C2 exon
GGTGATTCTGGTGGACCATTGTCATGTCAAAGCAATGAAGATGGAAAATGGTTTTTGACTGGCATTGTTAGCTGGGGTTATGGATGTGGAAGACCAAATTTTCCTGGTGTCTACACAAGAGTGTCAAATCTTGCACCATGGATTTACAAACATGTGCCTTCAGTCATGTAACTTGAAAGCTATTTCACTGGAATAAAACATGTGCTGGATATCTTCATTAAAAAGCATGTTTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389:ENSGALT00000024825:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAAGGTGCTGCAATTCT
R:
TCCAGCACATGTTTTATTCCAGTGA
Band lengths:
345-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]