DreINT0021998 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19173540-19173784:+
Coord C1 exon
chr1:19173540-19173602
Coord A exon
chr1:19173603-19173707
Coord C2 exon
chr1:19173708-19173784
Length
105 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
ATGTGTTCTTATTTATTCAGGTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
GAGAAGATGGAGCAACAGTTATCTGATCCTCGGCTCCTTACTCCAGACTTCAGCAAACCAGAG
Seq A exon
GTCAGAAACAGTCTCAATCTAATTGCTGGAGTTAAATTTTTTTAAACAGACTTTAAGGTTTAGTTACTTATGTCTTAATAAATAAATGTGTTCTTATTTATTCAG
Seq C2 exon
GTCCCTCTTCAGCTCCATGCGATCATGCTAGCTTTGGATGCTTTCCTGGAACAGCATGCTAGACTGCCCAATATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGGAGCAACAGTTATCTGA
R:
CAATATTGGGCAGTCTAGCATGC
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]