HsaINT0176071 @ hg38
Intron Retention
Gene
ENSG00000033178 | UBA6
Description
ubiquitin like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:67663139-67663947:-
Coord C1 exon
chr4:67663885-67663947
Coord A exon
chr4:67663216-67663884
Coord C2 exon
chr4:67663139-67663215
Length
669 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
ATTTTTAATGTTCTCAATAGGCA
3' ss Score
8.43
Exon sequences
Seq C1 exon
GAATCACTGGAGAGGCAGTTAAAACATCCAAAGTGCCTTATTGTGGATTTTAGCAACCCTGAG
Seq A exon
GTAAATAAACACTTTGCAGGTTTGAGAGAGGCAGCAGAATCAGAGATGAGAATTAGTGAGTGATTATGAAGTTAAAATGGAATAACCATGTAGGTATCTGGCTGTCGGGCCTTATAATGTGAGTATAATAAAGGTTATACTCACATATCTAAAGTTGACTTCTGAGGATTAAAAATGTGAATTTGTCTCATAGAAAAAAATGATAAAGTAATAGGAAAAAGTTTCACTTTTATAATGATTTGCCAACTTTGATAATTATAAGACGATTTCAATAACTTGTACAAAGATGATCTTATTAAAAGATTTTCTGAATCGTACCATTTTATACAATACATATTTCTTACCAAAAAAGCCTTGAGTATGTATTCTATTTTTTTTTAAAATGGATGTAATTTTGTAGCAGTAAATGTGATAAGGAAGGAACTAACAGTTTCCAAATTTGTAAATTTTAATAAGGAAAGGGGATTAGATCATTTACCTTCATGGCCTTGAGGTTAAGTCATTTAACTTCTAACCTTCAGGTTTCTTATTTGTTAAATAGAGTTAATAACAGTATTAAGCTAATGTGTTTATTATGATGGTTAAATAATGTTTTAAAAGTATTTAGCCCAGTGCCTGGGACATACAACCACTCAGTAAATGTTGGCCGATTTTTAATGTTCTCAATAG
Seq C2 exon
GCACCTTTAGAGATTCACACAGCTATGCTTGCCTTGGACCAGTTTCAGGAGAAATACAGTCGCAAGCCAAATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178:ENST00000322244:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains