MmuINT0168841 @ mm10
Intron Retention
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86147805-86148931:-
Coord C1 exon
chr5:86148869-86148931
Coord A exon
chr5:86147882-86148868
Coord C2 exon
chr5:86147805-86147881
Length
987 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
AATATTTTTTTTCCAAATAGGCA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GAACCCCTGGAGAGCCAGATAAAACATCCAAGGTGCCTTATTGCAGATTTTAGCAAACCTGAG
Seq A exon
GTAAATATTTACTTTGAAGGCTTGAAAGGGGCAATGGAGTGATGGATGGGATTTGGTAAATGATTCAAAACTTAAAATGGATTAACCATTGTTTCTAAAGGTTCTACTCTTAACCTCAATATTTAAAGTTCAAATCGAAGGATTTAAAATGAGAATTCATGCCACAAAATGGTAGAGGAGAATGAAGTTGTACTTTGGTGATTTGCTAGCTTTGATAATTAAGTAATTTTAGTAATATATATATATAGATGGGGCATTACTGTAAGATTTTTCTCAACTATGCAGTTCTATTGGACATTGGTTTATTTTATGTGCAGGGGAGGTAGCAGGTGAGCAGCAAGGAGATAATACAGCATCTGATTGGAGGTCAGAGGCTGGACTCCATCAGAGGTCATCAGGCTTGGTGGTAGGCCATTTCACTGGCCACAGAGTTTTATGTAGTACAGGGAGATACACCCTGAAGCTGTTATGTTCCACTTTATATTATTAGATATGATACCTTATCTTAACAGTAAATATATTATGATAAGAAATGAACAGTTTCCAAATTTATAAACACTAATTTAAAAAAACAGTTGTTTTTTTTTTATAAATGTTTTCTGGAGTGGTTCTGGTTTTGGATTTGGTTTCAGATTTTTGAGTCAGGGCGTATACATAGCCCAGGCTGACCTTGAAATCTGAGATCTACCTGCTTCCGAGTGCCGCCTCCTGGGTGCTGAGGCTAAAAGTGTCACCATGTCCAGTGGTACAAATGTTTATTATTGGCATTCAGCTGATATTTATTATGAATAACCTAGTAAACACTAATTATTTGGAAAATGCTTCTTAAAATACCTTTATTGTGTTGATGTCAAATCATTTAACTTTCCTAATGGTAATCATTATATTACACTCTATTATGAGGGTGAAATTAAATAATAGTTGGAAAACATTTACCCTAATCTATAGCACTTAACAAATGTTGGACAATATTTTTTTTCCAAATAG
Seq C2 exon
GCACCTTTAGAGATTCATCTCGCTATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAACCGTAAGCCAAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898:ENSMUST00000039373:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types