DreINT0021999 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19173708-19175181:+
Coord C1 exon
chr1:19173708-19173784
Coord A exon
chr1:19173785-19175114
Coord C2 exon
chr1:19175115-19175181
Length
1330 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATT
5' ss Score
6.19
3' ss Seq
TTTTTCTTGTTTGTCTGTAGTTG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTCCCTCTTCAGCTCCATGCGATCATGCTAGCTTTGGATGCTTTCCTGGAACAGCATGCTAGACTGCCCAATATTGG
Seq A exon
GTAATTAACTTTTACTCTGAAGTCCTAATACCTGATCACTGTGCTTTCAATAGGTTTTTCTACTCTTGATTAGGGACCGGGGCAAGAGGTCCTGGTTTCTATAAGTGAAGAATTTTGAATTTTTTCATTGGCTGAAATAGTTAGCAGTGTGTTCAGATTTTGATGTTTAGAGCCCTATGAAAATATTTCGTAAGGATGCTGGATTCTGTTCCCTTGTTTATTTATGATTCTATTTTATTCAATTATTTATTTATTTATTAATTTATTAATTTTCTTTTCAGCTTAGTCTCTTTATTAATCTGGGGTCCCCACAGTGGAATGAACCGCCAACTTATCCAGTATTTGTTTTATGCAGGGGATGCCCTTCCAGATGTAACACATCACTGGGAAACACTCATACACACTCATTCACACACATACACTACGGACAATTTAACTTCTGCAATTCACCTATATGTTGTTGGGGGGTGGACCAGAACACCTGGAATAAACCCACGCTAACATGGGGAGAACATGCAAACTCCACACAGAAATGGCAACTGAACCAGCCGAGGCTCGAGAAAGCCACCTTCTTGCTGTGATGTAATCGTGCTAACCACTGCGCCACTGTGACGCCCATTATTTATTTTAACTATTAATCTTTAGTGCCCGTGTTATTTTTATTTGTAATGACTTAAATAAACCAAAACTTTATGAAATATTATATTTATAATAATATTTATAGAATTTTTACAATTAGGAAACACCATATTTTGGGGATTTCTGTAGTCTTTAATTTCTCCAACAAAGTAATGCACATTCATGTGAAAATTAAAACAAAAAAGTATGGCAATAATTCATAAAATAATGAATTAATAACTTTATTATTAACATATTATTATAACTTTAAGAATTGCATTTTACTGTACAGAAGTAACATATTTCTGCTACAATTTCAAAGTCAAACTTTTATTTTGAAGGGTTGTAGTAAAGACCTTGATATGATTTGAAAATTTTGTTTATCTTGACAGCACACAAAATTGAATTAAATTATTATTGTTATTAAATTTAATTATTATGTGTAAACACTAAGTTGCAGCTAGAAGGCCATCCGTTGCATAAAACATATCCTGGGTAAGTTGGCGGTTCATTCCGCTGTGGCAACCCATGAATAATAAAGGGGTTAAGCCGAAAAGAAAATGAATGTAAACACTAAACAATATGCAGCATTCTACATAATGCTCCTCATAACTGTATAATAAAAATCAGTTGTTGCATCTTTCATTTCTCTTTAGTTATGATTGACATGAATAATTAAAAGTGATGGATTATTTTTCTTGTTTGTCTGTAG
Seq C2 exon
TTGTTTGCAGGATTCAGAGCTGCTTCTGAAATATACAGAGGAGATCAGCAAAACACTTAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]