MmuINT0168842 @ mm9
Intron Retention
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86576100-86576906:-
Coord C1 exon
chr5:86576830-86576906
Coord A exon
chr5:86576167-86576829
Coord C2 exon
chr5:86576100-86576166
Length
663 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATTTTTGTTTCAAACTATAGATG
3' ss Score
6.67
Exon sequences
Seq C1 exon
GCACCTTTAGAGATTCATCTCGCTATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAACCGTAAGCCAAATATCAG
Seq A exon
GTAATGCTTTTGGTTCTAAAACTAATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTTCTCCTTCTTCTTCTTCTCTTCTCCTCTTCTTCCTCCTCCTTTCCCCCCCCCTCTCTTTATGAAAACCATGTCTCAAAAATTATAGGTTGATAATAGAACTAACCTTTAATTACATTACTCACATAACTAGTAACATTATTACATTACTGGTAAATATGCTAAATTGCACAAATATGACATTTAAGGTGATTTATTATTGGTGGAAGTAGAAAGATCCATTTGTAAGAATGGAATCATACCACACGGGAATTTTTCATATTTAGAGACTTTAAAATCTATAGGTTTTAAAATCAGAACCTCTTCTAATTGGTGAACTGGCAATCTGTGATAATGTTTTCTAGCCTAAGTTAGAAATTGCAAGCTTCTTACCTTGTATGTTTAAATCTCAGTCTCATATGTTGTCTTAGATGACCATGATTTTGACGTAATGTCTTATGACTATAAGACAGCTAACTTTGAAGCTTAAAAAAACCTAAAAGTTAGATTAAACTTTGAAGTTAGATTAAAACACATTGTATTATATTTTGAATATAACCTTGGTGATAATTCCAAAAATTGAAGTTGTATTTTTGTTTCAAACTATAG
Seq C2 exon
ATGTCAGCAGGATTCAGATGAACTATTGAAGCTAACAGTATCTATAAATGAAACCTTGGAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-Uba6:NM_172712:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: