GgaINT0070347 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53148329-53149150:-
Coord C1 exon
chr4:53149074-53149150
Coord A exon
chr4:53148396-53149073
Coord C2 exon
chr4:53148329-53148395
Length
678 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
GTTTTCACCCTCATGTCCAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GCACCTTTGCAAATCCACATTGCCATGCTCGCATTGAACCACTTTGAGGAGAACTTTGGTCGCATGCCAAACATTGG
Seq A exon
GTAATGCAGCAGTCTCGTCTTTGCTAAGACTTGAAACAGGCAGATCTCTACTGTAGCTTGATGTGCAGCAGGGTTCCTTGTCTATCTGGTACTTAGGTGACATAGAAATTAAAAGCTGAAATCTGGGTGAAAAATGGTAATACCTGTCTAGTTTTGTAATTGGGCTTTCCCAGTGTAGCAATGGCAAGTTCTGGGCCTGGGTTTACAGAAAGTGTAAACACTTCCTTCTGAAAGCAGTTCTTCTCTGTTCCAGTTTCTTCACACTGAGAGGTTAAACAGCAGAAGTTGTTCAATGATTCCTGAATTATCTGTCAATTCATGGATTTAAAAAGACAAAAAAAAAAAAAAAATCAACTAACCCAAAACATAGGAAGGCTCTATTTTTTTCATTAGTAGTAGTTTGTTTCAGTTGTAGTTTATGTGGATACTTCTGAGTACAGTGAGAGAAAACTACTTACAAAGTGTAAATCACCTGACTTGCACATGAGCTTCTCCACTTCTCTTATTCTTGAGCTATCCTTAATATTTAAAGAGCTTCTGTAATGCTCGATATTAAAGCCAATGCACATTGCCAAAATCTTCCTCCTGTATCCAGCGATTCTTTCTCAATTGATTGTGTTTTTTAGAAGGACTCAAGAGTGCTTATGTGACCATTGTTGTTTTCACCCTCATGTCCAG
Seq C2 exon
ATGCCATCAAGATGCTGAGGAAATGCTGAAAATAGCCATATCAATAAGTGAAACCCTGGAAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]