DreINT0022013 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19187067-19187329:+
Coord C1 exon
chr1:19187067-19187130
Coord A exon
chr1:19187131-19187259
Coord C2 exon
chr1:19187260-19187329
Length
129 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATCTCTGTTTTGTCCTTCAGGCA
3' ss Score
10.99
Exon sequences
Seq C1 exon
GTCTGTTCTGGCAGTCTCCAAAACGACCACCTTCTCCCATAGACTTTGACCTCAGTGACCCGCT
Seq A exon
GTGAGTCTCTCAGTAATTATTTATAGTTCGTTGTTCATAGCTAAAGTGAGCATTCATTTTTACTGCAGTAAAACAAAGAATCAGGTGATGTGTGAAAGCTTATGAAAAAATCTCTGTTTTGTCCTTCAG
Seq C2 exon
GCATTTTGGTTTTGTTGTCAGCGCAGCTCGCCTTTTTGCTGGAATTTATAATATTCCATACTCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(13.2=31.8)
A:
NA
C2:
PF0213416=UBACT=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTTCTGGCAGTCTCCAA
R:
TATAAATTCCAGCAAAAAGGCGAGC
Band lengths:
114-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]