RnoINT0159007 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23546211-23547269:+
Coord C1 exon
chr14:23546211-23546274
Coord A exon
chr14:23546275-23547199
Coord C2 exon
chr14:23547200-23547269
Length
925 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTATTTTTATTTTAAAAGGCA
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTTTATTTTGGCAGTCACCAAAAAGGCCTCCTTCTCCAATAAAATTTGATTTAAATGAGCCTTT
Seq A exon
GTAAGTATATGTGTATATGTTAACTGTAAACTCCTTAGTTATGTAGTGCAGGATCTTCAGTGTTAAGTAACTTAAGTCTCTTAGTGCAAAAGTTAGCAAGTCTTTCTAGTCAGCAGAGCCAGCTGCATCTTCCTACACAAGTGTGCATCCATCTATTTATATGCTAAATAAGTCTATTGTTTATAATATCCACTCCATAAAACACAAAGTCGCCTCTACTCTTGCCTGTAAGAAAATAGAATGAAAATACATGTTCTTACAGTAAATAAAGCTAAGATGGTTTATGTGGAAATGCAGTTAATGTGACCCGCCTACATTCACACAAGTAAGGTTTTAGTGTGTCGCTGGTTTTAGACTCACACTTAGCACGTTTACTCTCATCAGACACTTAGTCTACCTTCATTAATCTGCCTTTCTACAAGTAGCACTTTGCTTAATTTTCTCAGCTCCTGCTTCCTTCAAAATTTCACTTACTATCCAAAATTGCCTTTCTAATATGACATACCCTTTTTTGTTTTTGCTGGTTCAAATCTAATGTATACTCATTCCTCATTCTTACACACACACACACACACACACACACACACACACACACACACACACATTCATTCTTATGAATTAAAATTACTTTTCTCCAAGTATTCTAATAGTTCTGCACATCACAGTATTTCTGGTGAATACTTGAATATAGTGTTTTAACATGTGTTTGTGTATCAAAAGGACATTTGGTATCTCCTTATGTGTTGTTTTAGTCTAGACAAGAATTTCATTGTCTTAACTTTAAAAGGGGTAAAAATTAATTCTGCAAAACAGAATTTAAATGGAGTTCTTAAGTGTTAACATGAAGGCTGTATTTCCTACTGACTTAAATATCTTCTTAAAATTGCCATTCAAACTGCTTCAGTTTTTATTTTTATTTTAAAAG
Seq C2 exon
GCACCTCAGTTTTCTTCAGAATGCTGCAAAACTATATGCTACAGTATATTGCATTCCGTTTTCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]