HsaINT0176086 @ hg19
Intron Retention
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68496184-68497489:-
Coord C1 exon
chr4:68497426-68497489
Coord A exon
chr4:68496254-68497425
Coord C2 exon
chr4:68496184-68496253
Length
1172 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTATTTTTTAATTTCAAAAGGCA
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTTTATTTTGGCAGTCACCAAAGAGGCCACCCTCTCCAATAAAATTTGATTTAAATGAGCCTTT
Seq A exon
GTAAGTATTTATATTTAGTTTTATGTATCCTTCATTATATATTTCTTTACTGTAAATTCCTTAACTGTACATTGCAGAGTGAAAACCTTAGGCTCTTTAATGTTAAATTATTTCATCCCTGTTCATTTAAGAGTTAACAAGTCATTCTGACCAAGAAAGCCAGCCACAACCCTTCCCACACAAATGTGAATCCATTCATTTACATGGTAAATAACCTCATTATTTATAATAAATATCTAAGGTGAAACCAAAATCACCTTTTTTACTTTATCCATAAATTAGTAAAATGACAATGTGTTTTTACATTTAATGAAATCAAATATAAGAATCTTCAGTTATATGGAGGAACAAATAATTACTACTGAATAACTCCCTAAATCTCAAATTATTTTCAGAGGAGTTGGTCTTTGTGTGAATACCTGGAAACACTATATTAGATACACATTAGATTCACACTTGTGTGTATATGTATATTTTTTCTATTTTTTTAATTTAGTTTTTATTCTTTGAAAGAGACAAGGTCTCACATATGTGGCCCAGCCTGGTCTTGAACTCCTAGGCTCAAGCAATCCTCGCACCTCAGCTTCCCAAGTAGCTGGGATTACAGGTGCATACCACCACACCCAACCTTATGTATATATATTTTTAAACACTTAGCTTGCATTCACTAACCTTCCTTTCAGCAGATAACTCTATGCTTAATTTTCTCATCTGGTGGTGGTTTTAGGCTTCCAGTCACCTTATGCTGGACTGCTTCTTCTATAAGACTTTCTTTTTTTGTTTTTAAATAAACACATTTACTTAGTTTGAACTTGATATATACTCATTAAGACCAAATGTATAATATTTCTTATGACTTAAAATGAATTATTGTTCACTGGTCTGAGTTTTCTGGTTCTGTCCACTCACTCCTCTTCCCAAGGTAGTCATGATCACTACCTGAATGTTAAGTGTTTTTGAGAATAACTGTTTGATGTTTTGTCTTTTATAACTTCTGTAGTGTTTTGGTGTAGACCAGAATATTTTTGTCTAACTTAAAAAAAAAAACTTGAAATAATAATTCTGTGGTTATATTTCTTCAAACTACATTTAAAGGCTATAGTTCATAATGAGTTAAATATCGTCTTTAAAACTGTACATTCAAATTTTGCTTTATTTTTTAATTTCAAAAG
Seq C2 exon
GCACCTCAGTTTCCTTCAGAATGCTGCAAAACTATATGCTACAGTATATTGTATTCCATTTGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-UBA6:NM_018227:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PU(12.3=31.8)
A:
NA
C2:
PF0213416=UBACT=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)